ZRdb KZFP & Repeats
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LTR_LTR54B

  • Name
    LTR54B
  • Repbase
    LTR54B
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000549
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttaaataaaatttatgggaggccattgttttggactgagctcctgcactaggccccaacagaccagaccaaaccaaaatggagtcactcgtgctaaggntgccacgtaatcaaactgaactttgaaacgggccagttttccaaaannaacagacttttnnnnnccgaaaacaaaaaacaggagattcacagcaaccaatcagaaggggcccagtcnacctgagccggcatgataaggaagtcccctctgctttaaccctntacaaggaaagtaacctgaagtaaccntgatgttaaccaatccgctttttgtnctatgtttctgtttccttgttcccgctcgnnctaccttacaaaanccaanctgttctgccatgcccagcggagcgctcnttctnattttgtagaatgggatgctgcccgattcatgaatcgcnaataaaagccaattagantctttaaactaaatttgttgataaattttgtcttttgacaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF549 150 87.0 Weakly correlated
2 ZNF766 85 43.0 Weakly correlated
3 ZNF175 75 94.0 Weakly correlated
4 ZNF589 51 28.9 Weakly correlated
5 ZNF584 40 99.0 Weakly correlated
6 ZNF197 36 99.0 Weakly correlated
7 ZNF382 33 99.0 Weakly correlated
8 ZKSCAN8 25 160.0 Weakly correlated
9 ZNF394 11 99.0 Weakly correlated
10 ZIM3 7 87.0 Weakly correlated
11 ZNF2 6 99.0 Weakly correlated
12 ZNF679 6 28.9 Weakly correlated
13 ZFP37 5 99.0 Weakly correlated
14 ZNF263 5 180.0 Weakly correlated
15 ZNF101 5 43.0 Weakly correlated
16 ZNF534 4 19.6 Weakly correlated
17 ZNF506 4 28.9 Weakly correlated
18 ZNF440 4 28.9 Weakly correlated
19 ZNF723 4 15.2 Weakly correlated
20 ZNF18 4 160.0 Weakly correlated
21 ZNF680 4 28.9 Weakly correlated
22 ZNF610 3 28.9 Weakly correlated
23 ZNF597 3 94.0 Weakly correlated
24 ZNF324 3 99.0 Weakly correlated
25 ZFP69B 3 99.0 Weakly correlated
26 ZNF490 3 43.0 Weakly correlated
27 ZNF793 2 99.0 Weakly correlated
28 ZNF823 2 43.0 Weakly correlated
29 ZNF85 2 28.9 Weakly correlated
30 ZNF558 2 99.0 Weakly correlated
31 ZNF554 2 99.0 Weakly correlated
32 ZFP57 2 87.0 Weakly correlated
33 ZNF701 2 28.9 Weakly correlated
34 ZKSCAN1 2 160.0 Weakly correlated
35 ZNF133 2 99.0 Weakly correlated
36 ZNF140 2 99.0 Weakly correlated
37 ZNF425 2 94.0 Weakly correlated
38 ZNF320 2 28.9 Weakly correlated
39 ZNF528 2 43.0 Weakly correlated
40 ZNF182 2 99.0 Weakly correlated
41 ZNF257 1 0.0 Weakly correlated
42 ZNF780A 1 43.0 Weakly correlated
43 ZNF778 1 74.0 Highly correlated
44 ZNF17 1 69.0 Moderately correlated
45 ZNF735 1 28.9 Weakly correlated
46 ZNF707 1 74.0 Highly correlated
47 ZNF251 1 94.0 Weakly correlated
48 ZNF273 1 28.9 Weakly correlated
49 ZNF641 1 99.0 Weakly correlated
50 ZNF317 1 99.0 Weakly correlated
51 ZNF429 1 28.9 Weakly correlated
52 ZNF468 1 28.9 Weakly correlated
53 ZNF485 1 94.0 Weakly correlated
54 ZNF519 1 19.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF549 78 87.0 Weakly correlated
2 ZNF440 4 28.9 Weakly correlated
3 ZNF175 4 94.0 Weakly correlated
4 ZIM3 3 87.0 Weakly correlated
5 ZNF197 3 99.0 Weakly correlated
6 ZNF766 3 43.0 Weakly correlated
7 ZNF528 2 43.0 Weakly correlated
8 ZNF506 2 28.9 Weakly correlated
9 ZNF723 2 15.2 Weakly correlated
10 ZNF679 2 28.9 Weakly correlated
11 ZNF597 2 94.0 Weakly correlated
12 ZNF584 2 99.0 Weakly correlated
13 ZNF490 2 43.0 Weakly correlated
14 ZNF101 2 43.0 Weakly correlated
15 ZNF382 1 99.0 Weakly correlated
16 ZNF263 1 180.0 Weakly correlated
17 ZNF793 1 99.0 Weakly correlated
18 ZNF780A 1 43.0 Weakly correlated
19 ZNF17 1 69.0 Moderately correlated
20 ZNF680 1 28.9 Weakly correlated
21 ZNF324 1 99.0 Weakly correlated
22 ZNF534 1 19.6 Weakly correlated
23 ZNF140 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats