ZRdb KZFP & Repeats
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LTR_LTR54

  • Name
    LTR54
  • Repbase
    LTR54
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000548
Description :

5' end is similar to portions of MER57-int; putative remnant of anearlier LTR54 insertion in a common ancestor of these viruses.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttaaataaaatttataggaggccattgntttggactgagctcctgcactaggccccaacagaacagaccaaaccaaaatggagtcactcatgctaaagttccacgtcaccaagccgaaactaagttgtttatctgaccttccgagaaatcaggagagagagaganntaatagccaaatccccaaacaggccagttttagccggcatgataaggaagtcccctctgctttaacctttaacctgatgttaancaatcagttatttttctattgttctgtctccctgttttnaccttacaaggaaagtaactttgaaacgaccaatccgctttttgttctctgtttctgctttcttcagcccttttctgtctataaagccaacctcctctgctcagctcatcggaacactcattctattttatagaatgaggtgttgcccgattctagaatcgcaaataaaagccaattaagatctttaaactaaatttgttgtaattttgtcttttgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 170 43.0 Weakly correlated
2 ZNF175 130 94.0 Weakly correlated
3 ZNF589 112 28.9 Weakly correlated
4 ZNF197 97 99.0 Weakly correlated
5 ZNF584 90 99.0 Weakly correlated
6 ZKSCAN8 67 160.0 Weakly correlated
7 ZNF382 56 99.0 Weakly correlated
8 ZNF549 34 87.0 Weakly correlated
9 ZNF394 20 99.0 Weakly correlated
10 ZIM3 16 87.0 Weakly correlated
11 ZNF547 12 74.0 Highly correlated
12 ZNF2 12 99.0 Weakly correlated
13 ZFP37 11 99.0 Weakly correlated
14 ZFP69B 11 99.0 Weakly correlated
15 ZNF723 9 15.2 Weakly correlated
16 ZNF18 9 160.0 Weakly correlated
17 ZKSCAN1 9 160.0 Weakly correlated
18 ZNF101 8 43.0 Weakly correlated
19 ZNF317 6 99.0 Weakly correlated
20 ZNF263 6 180.0 Weakly correlated
21 ZNF558 5 99.0 Weakly correlated
22 ZNF140 5 99.0 Weakly correlated
23 ZNF441 4 43.0 Weakly correlated
24 ZNF324 4 99.0 Weakly correlated
25 ZNF610 4 28.9 Weakly correlated
26 ZNF823 4 43.0 Weakly correlated
27 ZNF705D 3 28.9 Weakly correlated
28 ZNF705B 3 28.9 Weakly correlated
29 ZNF597 3 94.0 Weakly correlated
30 ZNF133 3 99.0 Weakly correlated
31 ZNF506 3 28.9 Weakly correlated
32 ZNF251 3 94.0 Weakly correlated
33 ZFP28 2 99.0 Weakly correlated
34 ZNF793 2 99.0 Weakly correlated
35 ZIK1 2 87.0 Weakly correlated
36 ZNF735 2 28.9 Weakly correlated
37 ZNF701 2 28.9 Weakly correlated
38 ZNF680 2 28.9 Weakly correlated
39 ZNF679 2 28.9 Weakly correlated
40 ZNF585B 2 99.0 Weakly correlated
41 ZNF202 2 160.0 Weakly correlated
42 ZNF528 2 43.0 Weakly correlated
43 ZNF282 2 319.0 Weakly correlated
44 ZNF44 2 43.0 Weakly correlated
45 ZNF257 1 0.0 Weakly correlated
46 ZNF287 1 99.0 Weakly correlated
47 ZNF799 1 43.0 Weakly correlated
48 ZNF354A 1 99.0 Weakly correlated
49 ZNF778 1 74.0 Highly correlated
50 ZNF284 1 43.0 Weakly correlated
51 ZNF75D 1 94.0 Weakly correlated
52 ZNF534 1 19.6 Weakly correlated
53 ZKSCAN5 1 160.0 Weakly correlated
54 ZNF429 1 28.9 Weakly correlated
55 ZNF440 1 28.9 Weakly correlated
56 ZNF169 1 94.0 Weakly correlated
57 ZNF682 1 28.9 Weakly correlated
58 ZNF554 1 99.0 Weakly correlated
59 ZNF479 1 6.4 Weakly correlated
60 ZNF124 1 43.0 Weakly correlated
61 ZNF485 1 94.0 Weakly correlated
62 ZNF12 1 99.0 Weakly correlated
63 ZNF586 1 43.0 Weakly correlated
64 ZNF486 1 8.6 Weakly correlated
65 ZNF490 1 43.0 Weakly correlated
66 ZNF568 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF197 34 99.0 Weakly correlated
2 ZNF584 24 99.0 Weakly correlated
3 ZNF589 18 28.9 Weakly correlated
4 ZNF175 16 94.0 Weakly correlated
5 ZNF549 13 87.0 Weakly correlated
6 ZIM3 8 87.0 Weakly correlated
7 ZNF723 5 15.2 Weakly correlated
8 ZNF766 3 43.0 Weakly correlated
9 ZNF597 3 94.0 Weakly correlated
10 ZNF101 3 43.0 Weakly correlated
11 ZNF140 2 99.0 Weakly correlated
12 ZNF317 2 99.0 Weakly correlated
13 ZNF382 2 99.0 Weakly correlated
14 ZNF735 2 28.9 Weakly correlated
15 ZIK1 2 87.0 Weakly correlated
16 ZNF823 1 43.0 Weakly correlated
17 ZNF44 1 43.0 Weakly correlated
18 ZKSCAN8 1 160.0 Weakly correlated
19 ZFP28 1 99.0 Weakly correlated
20 ZNF528 1 43.0 Weakly correlated
21 ZNF263 1 180.0 Weakly correlated
22 ZNF202 1 160.0 Weakly correlated
23 ZNF251 1 94.0 Weakly correlated
24 ZFP37 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZIM3 87.0 Weakly correlated
2 ZNF175 94.0 Weakly correlated
3 ZNF197 99.0 Weakly correlated
4 ZNF584 99.0 Weakly correlated
5 ZNF589 28.9 Weakly correlated