ZRdb KZFP & Repeats
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LTR_LTR53B

  • Name
    LTR53B
  • Repbase
    LTR53B
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000546
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtattgtaaggcctaaaatttcangtgctgccttgacatctttgagcctcacagggccccaaaggcctaaccgtgagttcccctgctctcgccagatatgccccccacccagcgggaaaggctccccacccggctagttcccctatcagccggaccagctgcaccccncccacctggtcctcaacctaacgggtttcacctccctgccagcccgcgaaattattcaaacaagccaatcacatcctcccgcgggaaccaggggncacctcaccctcttgttactacaaagcctgcctcccacagcccctgctggttcactctgctcccgagtgcaacccccgtgtggccctgcgncgcgnccgcgcgnncatggcgtgcggtgtcctcctccgggctgtgagtatatgtgactaataaactgctgtcaatcntcatctgtccagtgtcgggtgtcgtgtgttcggccatctcgtactatttagggcggggatccctccttcaccaacggggtgaataggaggtgatcagaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF75D 12 94.0 Moderately correlated
2 ZNF382 10 99.0 Highly correlated
3 ZNF589 7 28.9 Weakly correlated
4 ZKSCAN1 5 160.0 Weakly correlated
5 ZNF584 5 99.0 Highly correlated
6 ZNF766 5 43.0 Weakly correlated
7 ZNF534 4 19.6 Weakly correlated
8 ZNF263 4 180.0 Weakly correlated
9 ZNF257 4 0.0 Weakly correlated
10 ZNF793 3 99.0 Highly correlated
11 ZNF197 3 99.0 Highly correlated
12 ZNF175 3 94.0 Moderately correlated
13 ZKSCAN8 3 160.0 Weakly correlated
14 ZNF554 3 99.0 Highly correlated
15 ZNF597 2 94.0 Moderately correlated
16 ZNF816 2 28.9 Weakly correlated
17 ZNF519 2 19.6 Weakly correlated
18 ZNF2 2 99.0 Highly correlated
19 ZNF479 2 6.4 Weakly correlated
20 ZNF701 1 28.9 Weakly correlated
21 ZNF92 1 28.9 Weakly correlated
22 ZNF91 1 6.0 Weakly correlated
23 ZNF189 1 99.0 Highly correlated
24 ZNF273 1 28.9 Weakly correlated
25 ZNF28 1 28.9 Weakly correlated
26 ZNF723 1 15.2 Weakly correlated
27 ZNF707 1 74.0 Weakly correlated
28 ZNF705D 1 28.9 Weakly correlated
29 ZNF705B 1 28.9 Weakly correlated
30 ZNF679 1 28.9 Weakly correlated
31 ZNF610 1 28.9 Weakly correlated
32 ZNF317 1 99.0 Highly correlated
33 ZNF320 1 28.9 Weakly correlated
34 ZNF394 1 99.0 Highly correlated
35 ZNF425 1 94.0 Moderately correlated
36 ZNF440 1 28.9 Weakly correlated
37 ZFP37 1 99.0 Highly correlated
38 ZNF506 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF75D 7 94.0 Moderately correlated
2 ZNF534 4 19.6 Weakly correlated
3 ZNF479 2 6.4 Weakly correlated
4 ZNF793 2 99.0 Highly correlated
5 ZNF584 2 99.0 Highly correlated
6 ZNF175 1 94.0 Moderately correlated
7 ZNF197 1 99.0 Highly correlated
8 ZNF2 1 99.0 Highly correlated
9 ZNF440 1 28.9 Weakly correlated
10 ZNF589 1 28.9 Weakly correlated
11 ZNF320 1 28.9 Weakly correlated
12 ZNF816 1 28.9 Weakly correlated
13 ZNF723 1 15.2 Weakly correlated
14 ZNF506 1 28.9 Weakly correlated
15 ZNF189 1 99.0 Highly correlated
16 ZNF707 1 74.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF75D 94.0 Moderately correlated