ZRdb KZFP & Repeats
...

LTR_LTR53

  • Name
    LTR53
  • Repbase
    LTR53
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000545
Description :

MER73-type.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggtgtaaggcctaaaattaaggcccaatattatgtgctgccttgacatctggtgaaatcgggagggcctcgaatggcctaaccgcaagttcccctccccactctgctcccgcggataaggtcccctagccaaacaaccctccttatcaaggggaccaggcgcagttcctgcttatccctgncgagtagcgggtttcagttccctgccagcccgcggaattattcaaacaagccaatcacatcctcccgcgggaaccaggggncaccccaccctcttgatactacaaagcctgcctcccacagcccctggttgttcactctgttcccgagtgcaacccccgtgtggccctgcgtggcgtgcggtgtcctcctcccccgggctgtgagtatatgtgactaataaactgctgtcgatctcatctgtccagtgtcgggtgtcgtgtgttcggccatccccataaccctagggcgggaatccctccctcaccaacggggtgaanaggaggcgattaaaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 60 43.0 Weakly correlated
2 ZNF589 44 28.9 Weakly correlated
3 ZKSCAN1 36 160.0 Weakly correlated
4 ZNF175 35 94.0 Moderately correlated
5 ZKSCAN8 34 160.0 Weakly correlated
6 ZNF197 32 99.0 Highly correlated
7 ZNF584 31 99.0 Highly correlated
8 ZNF263 27 180.0 Weakly correlated
9 ZNF18 26 160.0 Weakly correlated
10 ZNF382 24 99.0 Highly correlated
11 ZIM3 18 87.0 Moderately correlated
12 ZNF274 11 99.0 Highly correlated
13 ZNF534 10 19.6 Weakly correlated
14 ZNF701 8 28.9 Weakly correlated
15 ZNF75D 8 94.0 Moderately correlated
16 ZNF317 7 99.0 Highly correlated
17 ZNF554 7 99.0 Highly correlated
18 ZNF140 6 99.0 Highly correlated
19 ZNF394 6 99.0 Highly correlated
20 ZFP37 5 99.0 Highly correlated
21 ZNF479 4 6.4 Weakly correlated
22 ZNF723 4 15.2 Weakly correlated
23 ZNF28 4 28.9 Weakly correlated
24 ZNF320 4 28.9 Weakly correlated
25 ZNF680 4 28.9 Weakly correlated
26 ZNF331 3 94.0 Moderately correlated
27 ZNF679 3 28.9 Weakly correlated
28 ZNF506 3 28.9 Weakly correlated
29 ZNF486 2 8.6 Weakly correlated
30 ZNF324 2 99.0 Highly correlated
31 ZNF2 2 99.0 Highly correlated
32 ZNF597 2 94.0 Moderately correlated
33 ZNF674 2 99.0 Highly correlated
34 ZNF707 1 74.0 Weakly correlated
35 ZNF436 1 180.0 Weakly correlated
36 ZNF808 1 19.6 Weakly correlated
37 ZNF823 1 43.0 Weakly correlated
38 ZNF626 1 0.0 Weakly correlated
39 ZNF585B 1 99.0 Highly correlated
40 ZNF549 1 87.0 Moderately correlated
41 ZNF441 1 43.0 Weakly correlated
42 ZNF425 1 94.0 Moderately correlated
43 ZNF257 1 0.0 Weakly correlated
44 ZFP69 1 99.0 Highly correlated
45 ZFP69B 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF589 20 28.9 Weakly correlated
2 ZNF197 18 99.0 Highly correlated
3 ZNF584 17 99.0 Highly correlated
4 ZNF175 16 94.0 Moderately correlated
5 ZNF263 13 180.0 Weakly correlated
6 ZIM3 8 87.0 Moderately correlated
7 ZNF534 6 19.6 Weakly correlated
8 ZNF28 4 28.9 Weakly correlated
9 ZKSCAN1 4 160.0 Weakly correlated
10 ZNF18 4 160.0 Weakly correlated
11 ZNF75D 3 94.0 Moderately correlated
12 ZNF701 3 28.9 Weakly correlated
13 ZNF320 2 28.9 Weakly correlated
14 ZNF479 2 6.4 Weakly correlated
15 ZNF723 2 15.2 Weakly correlated
16 ZNF766 2 43.0 Weakly correlated
17 ZNF506 1 28.9 Weakly correlated
18 ZKSCAN8 1 160.0 Weakly correlated
19 ZNF626 1 0.0 Weakly correlated
20 ZNF554 1 99.0 Highly correlated
21 ZNF382 1 99.0 Highly correlated
22 ZFP37 1 99.0 Highly correlated
23 ZNF674 1 99.0 Highly correlated
24 ZNF317 1 99.0 Highly correlated
25 ZNF441 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZIM3 87.0 Moderately correlated
2 ZNF175 94.0 Moderately correlated
3 ZNF197 99.0 Highly correlated
4 ZNF584 99.0 Highly correlated
5 ZNF589 28.9 Weakly correlated