ZRdb KZFP & Repeats
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LTR_LTR53-INT

  • Name
    LTR53-INT
  • Repbase
    No find
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000547
Description :

Boreoeutherian specific. Pos 800-3104 contain a degraded pol region.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
acggntggcataaacaggatggcccaaccatgaccgaggacacctggtcagctttaactaactgctctttgctgctaactggttccgtgatacggccagaaggtctgcaccatgagtgattggatggagacagaaactgaaagccgtgacttnatgcggctagaaatccaaaatattctgaggaaatttgtacagagagaaaanaagtaggngagggaagtccgcgntgcaagaaaaggcggggccgtagcagaggatggtttcaatccactgacctctgggttgtgggctcagnacgnttccgctgcgccgctctgctgcctatgcctctgtcgcaacaaagatcctgatcctcagggttatagggaaaaacacccatggcacccctgtggcacagcgaaggggttaattcaaacccgacttaagcccggggttcttaaaccctataaagcaaccattgccacgggggaggcccctaaccctgacgatactgatttgaggctctctggaggaagaaatttataaatatgagcagggtagagaggaccctccccaccgaagtatatccagtgacaaaaggaaaaaagagggagagaaaggaacctgganacaaggggagagaaagnnaaacctgnacaaaagaaacaaaaattaaactgaaacagaggtccacaatttgacccaattggaaatccaaaatttactaaaanaatttatacaacaaaaagataaaangggcgctgattggcttttgcgcctctacaacataggttctgaattaactttaacatctgctgaaatgcaccaattggcaaaccttcatggncttaatcaatactggggctcaaattacagttatacctggggatcccactaaatttaaacanggtaccccctataatcttaggggagttactgaatataaaatagaggacaaataggtatgcctcaccttaaccatcagaactattgccttgcctaaattccccatggtcatagcacccattgccctaaaatatcccatagtgggcatggacgctctgacccaatgagtaataaattaaaattaaattaagtctttggcacttacaaattggcttgacaaaatgggaccccatggacccccagttaaaatagttaatacggcccaatgtaaattaaaacagggccttcaaggattgaaacccattatataagacctanttagngaaggggtgattatccccactgcttctccatttaacagcccaatttggcctgttcttaaacctggaaagaatgaatggcgcctcacggtggattaccgcaaccttaatgccgtggtcccacccattaaggcccccatacccaatacccaatattattgaaattactgactccatccaatcagcaactggtaaatattttgctattatagatttggctaatatgttctgttcagtgcctatttcaacagcctctcagccgcagtttgccttcacctccgaagggacacaatacacctttaccaggctacccatggggtacctcagcagccttgccatcgcacacagtctttgcaggcaagatcttaactgcatccanctttctccaggagcacaggtatgacattacattgatgacatcctcctccgaggagattcatttgacacactcattcaggacatacaaatactcacaaaggagctcacaaaaaggggatgggccattgccccacacatagtgcaaggccccgccacctcggttaaattcctgaaaattatttggtaaaccgagggccgctccatccctgacactgtcaagaaacagctattgaccctctcagcacccacaacgttaanacaagcccaacatcttttagncctttttgggttctggaggcaacatattcctcatttacaaattttacttaancccacttatgctgttacttgcaaatcggcccaccttgaatggggccccctccaacaaaaggctctagaatctgtccaaattgcaatcaacaggcactcccattagtgcccccagagactccttcactgtagaggctttagcaacctcctctcatgcctcctggagtctctggaccacccatgatggccataagttgcccatgggcttctgatgcaagaaactgccctcctcggccccgcgctatacaccattagagcggcaattgctggccgcatactgggctctcctggaaacagaggctctcacaggccctgagcctgtgaccctccgtacccagctgcccattatgccttgggtcatggaagcagcaccccgcaagctcggcacggctaccgaggcctccttgctacaggatggagccaaacctgggccctctggcatatcccacctgcaggagggggtggcctcccctgtcctcagtcccttgccagatgccatggtgctggaggaggtcacccctctcccagaccccttggctacctggggagccccttgggatcaactgagtgaacagcaatgggagttcgtacactttacggatggcatcgccaccatcatacgtgatggagctcagtggagngttgctgctttccatcccttaaccaggacgtccctgataaaggacgggacccaaggntcagcacaattggccaaacttcaggcggtcatcttagcactggatgccctggccaacaantggccccatctgcacatttttacaaactcttgggccattgcctaagagttgccccctttggggtaaagaactctgggaatctcttgcctcacagatacccaaaatataaatcaaggtaacagatgtctctacatatactaaggccacaatacaaggcctcaccaggacactccttatccccttcggagttccagacattactgatagtgaccaaggcactcatttcacttctcagaatacacaacgccgggctcttgaagaaggcattcaatggaacttccacctcccctataggccccaggcagcnggtttaattgagaggcataatgggctcctcaaagaactcctatttaagttacaaagtggcaaatggacgccccgctgggtgtcactattgccacaggcattgattagtctaaattcacgccccctggggacacgcactccctacaccaatgccacacaggtccctcaattgcctttactggccataaagggggacacctctaaagttcatgtttttgacgaccacctcaccatgtggccctctccctcctggtcaagtgcctacttcgcttcctagggaggcacttctactccctagaagtctcagtcatcaccaaggtttaaattgatgtcaaggcatcaaggggtcaat
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 16 99.0 Highly correlated
2 ZNF705B 15 28.9 Weakly correlated
3 ZNF723 11 15.2 Weakly correlated
4 ZNF766 9 43.0 Weakly correlated
5 ZNF394 6 99.0 Highly correlated
6 ZKSCAN1 6 160.0 Weakly correlated
7 ZNF175 6 94.0 Moderately correlated
8 ZNF132 5 94.0 Moderately correlated
9 ZNF8 4 99.0 Highly correlated
10 ZNF534 4 19.6 Weakly correlated
11 ZNF589 4 28.9 Weakly correlated
12 ZNF680 4 28.9 Weakly correlated
13 ZNF197 3 99.0 Highly correlated
14 ZNF133 3 99.0 Highly correlated
15 ZFP57 3 87.0 Moderately correlated
16 ZNF707 2 74.0 Weakly correlated
17 ZNF705D 2 28.9 Weakly correlated
18 ZNF808 2 19.6 Weakly correlated
19 ZNF679 2 28.9 Weakly correlated
20 ZNF813 2 28.9 Weakly correlated
21 ZNF547 2 74.0 Weakly correlated
22 ZNF816 2 28.9 Weakly correlated
23 ZFP37 2 99.0 Highly correlated
24 ZNF317 2 99.0 Highly correlated
25 ZKSCAN8 2 160.0 Weakly correlated
26 ZNF18 2 160.0 Weakly correlated
27 ZNF202 2 160.0 Weakly correlated
28 ZNF257 1 0.0 Weakly correlated
29 ZFP28 1 99.0 Highly correlated
30 ZIM3 1 87.0 Moderately correlated
31 ZNF101 1 43.0 Weakly correlated
32 ZNF786 1 99.0 Highly correlated
33 ZNF135 1 94.0 Moderately correlated
34 ZNF141 1 43.0 Weakly correlated
35 ZNF157 1 99.0 Highly correlated
36 ZNF701 1 28.9 Weakly correlated
37 ZNF224 1 69.0 Weakly correlated
38 ZNF251 1 94.0 Moderately correlated
39 ZNF2 1 99.0 Highly correlated
40 ZNF584 1 99.0 Highly correlated
41 ZNF549 1 87.0 Moderately correlated
42 ZNF263 1 180.0 Weakly correlated
43 ZNF26 1 99.0 Highly correlated
44 ZNF490 1 43.0 Weakly correlated
45 ZNF486 1 8.6 Weakly correlated
46 ZNF485 1 94.0 Moderately correlated
47 ZNF274 1 99.0 Highly correlated
48 ZNF28 1 28.9 Weakly correlated
49 ZNF33A 1 99.0 Highly correlated
50 ZNF331 1 94.0 Moderately correlated
51 ZNF320 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF723 8 15.2 Weakly correlated
2 ZNF705B 7 28.9 Weakly correlated
3 ZNF132 5 94.0 Moderately correlated
4 ZNF816 2 28.9 Weakly correlated
5 ZNF382 1 99.0 Highly correlated
6 ZNF701 1 28.9 Weakly correlated
7 ZNF705D 1 28.9 Weakly correlated
8 ZNF485 1 94.0 Moderately correlated
9 ZNF808 1 19.6 Weakly correlated
10 ZNF331 1 94.0 Moderately correlated
11 ZNF679 1 28.9 Weakly correlated
12 ZNF317 1 99.0 Highly correlated
13 ZNF534 1 19.6 Weakly correlated
14 ZNF141 1 43.0 Weakly correlated
15 ZNF490 1 43.0 Weakly correlated
16 ZNF133 1 99.0 Highly correlated
17 ZFP57 1 87.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF723 15.2 Weakly correlated