ZRdb KZFP & Repeats
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LTR_LTR52

  • Name
    LTR52
  • Repbase
    LTR52
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000543
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtaataaagagtctgactccattttttgatgtttgactgctgacagcttttaagcctcacccctccctcttccctttgccccacatctgggcaagctgataagaaagcccgggtgctccctcctttggcgccggcgggaagttcaaaccacgcaagcccctgcctgcgggaaccctcaccccggccccacccccntaaccacaataaaaaccccaagccagtctcctttccctgctctctcaagccattttcggacctgcttgggaggcctgccctgctctccccagaaagcctcanttatgtgagtaataaaccttttcataccctcttggtgcgtgtgtggcatcatcagtctcgacatccgaaccaaattttgggtgggggagtccatcctgcctctgcagggtgaccacaacaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 39 43.0 Weakly correlated
2 ZNF382 32 99.0 Highly correlated
3 ZNF263 22 180.0 Weakly correlated
4 ZNF589 18 28.9 Weakly correlated
5 ZNF197 18 99.0 Highly correlated
6 ZNF175 17 94.0 Moderately correlated
7 ZKSCAN1 16 160.0 Weakly correlated
8 ZNF584 15 99.0 Highly correlated
9 ZKSCAN8 12 160.0 Weakly correlated
10 ZNF793 12 99.0 Highly correlated
11 ZNF705D 12 28.9 Weakly correlated
12 ZNF18 12 160.0 Weakly correlated
13 ZNF394 10 99.0 Highly correlated
14 ZNF534 7 19.6 Weakly correlated
15 ZNF705B 7 28.9 Weakly correlated
16 ZFP69B 6 99.0 Highly correlated
17 ZNF682 6 28.9 Weakly correlated
18 ZNF680 5 28.9 Weakly correlated
19 ZNF679 5 28.9 Weakly correlated
20 ZNF597 5 94.0 Moderately correlated
21 ZNF2 5 99.0 Highly correlated
22 ZFP37 5 99.0 Highly correlated
23 ZNF75D 4 94.0 Moderately correlated
24 ZIM3 4 87.0 Moderately correlated
25 ZNF347 4 43.0 Weakly correlated
26 ZNF611 3 19.6 Weakly correlated
27 ZNF320 3 28.9 Weakly correlated
28 ZNF317 3 99.0 Highly correlated
29 ZNF101 3 43.0 Weakly correlated
30 ZNF133 3 99.0 Highly correlated
31 ZNF140 2 99.0 Highly correlated
32 ZNF182 2 99.0 Highly correlated
33 ZNF8 2 99.0 Highly correlated
34 ZNF695 2 28.9 Weakly correlated
35 ZNF264 2 99.0 Highly correlated
36 ZNF273 2 28.9 Weakly correlated
37 ZNF792 2 94.0 Moderately correlated
38 ZNF479 2 6.4 Weakly correlated
39 ZNF441 2 43.0 Weakly correlated
40 ZNF84 2 99.0 Highly correlated
41 ZNF324 2 99.0 Highly correlated
42 ZNF626 1 0.0 Weakly correlated
43 ZNF93 1 8.6 Weakly correlated
44 ZNF878 1 43.0 Weakly correlated
45 ZNF91 1 6.0 Weakly correlated
46 ZNF716 1 19.6 Weakly correlated
47 ZNF723 1 15.2 Weakly correlated
48 ZNF727 1 19.6 Weakly correlated
49 ZNF789 1 99.0 Highly correlated
50 ZNF486 1 8.6 Weakly correlated
51 ZNF100 1 28.9 Weakly correlated
52 ZNF157 1 99.0 Highly correlated
53 ZNF257 1 0.0 Weakly correlated
54 ZNF274 1 99.0 Highly correlated
55 ZNF282 1 319.0 Weakly correlated
56 ZNF28 1 28.9 Weakly correlated
57 ZNF350 1 99.0 Highly correlated
58 ZNF37A 1 99.0 Highly correlated
59 ZNF418 1 43.0 Weakly correlated
60 ZNF429 1 28.9 Weakly correlated
61 ZNF610 1 28.9 Weakly correlated
62 ZNF506 1 28.9 Weakly correlated
63 ZNF528 1 43.0 Weakly correlated
64 ZNF547 1 74.0 Weakly correlated
65 ZNF549 1 87.0 Moderately correlated
66 ZNF554 1 99.0 Highly correlated
67 ZNF558 1 99.0 Highly correlated
68 ZNF570 1 99.0 Highly correlated
69 ZNF578 1 15.2 Weakly correlated
70 ZNF607 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF263 12 180.0 Weakly correlated
2 ZNF589 9 28.9 Weakly correlated
3 ZNF584 9 99.0 Highly correlated
4 ZNF175 8 94.0 Moderately correlated
5 ZNF197 8 99.0 Highly correlated
6 ZNF793 8 99.0 Highly correlated
7 ZNF766 7 43.0 Weakly correlated
8 ZNF347 4 43.0 Weakly correlated
9 ZNF75D 3 94.0 Moderately correlated
10 ZNF534 2 19.6 Weakly correlated
11 ZNF133 2 99.0 Highly correlated
12 ZNF18 2 160.0 Weakly correlated
13 ZNF101 2 43.0 Weakly correlated
14 ZNF320 1 28.9 Weakly correlated
15 ZNF679 1 28.9 Weakly correlated
16 ZNF429 1 28.9 Weakly correlated
17 ZNF264 1 99.0 Highly correlated
18 ZNF680 1 28.9 Weakly correlated
19 ZNF789 1 99.0 Highly correlated
20 ZNF382 1 99.0 Highly correlated
21 ZIM3 1 87.0 Moderately correlated
22 ZNF257 1 0.0 Weakly correlated
23 ZNF695 1 28.9 Weakly correlated
24 ZKSCAN8 1 160.0 Weakly correlated
25 ZNF317 1 99.0 Highly correlated
26 ZNF28 1 28.9 Weakly correlated
27 ZNF723 1 15.2 Weakly correlated
28 ZNF597 1 94.0 Moderately correlated
29 ZNF140 1 99.0 Highly correlated
30 ZKSCAN1 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF793 99.0 Highly correlated