ZRdb KZFP & Repeats
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LTR_LTR51

  • Name
    LTR51
  • Repbase
    LTR51
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000542
Description :

3'-similar to MER49, MER72 and MER101 (70% or less). MER4 group.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgatctgagagaccaaaatagacgcccctttatcaactaagacggaccctaaggttaaggaaacaaaagttacctacgggtcgagggttcagggcccggctggcatggcaaatttctaaattcctacaagaaaaaccacactcttgctaaactccctaacacgataggagctatcaggcaaattntcagacccctcctaactctgatttacaacccagaccactacaactctgattggacagaggaccggccttacaaacattcttttctgataagcaactgcagaccttaagccagtttcagccagcttatagaggctgcgcacaaactgtctttgtgtcctatagttcaccttttgacgtaaagagccaaattccacctcattttaatgctaaaaccccgccccaaagtgaacatgggatgtatgttacatatatgtttacccattgcgcatgcgctcggctcccctcataaatatgtatagcttttcccccaaacctgctgaatatgtatgactctattgtgtaatacgggccctgtgaggcataaaacccaacctgcccttcccctcttcgaagagagagcaccttcggtccacgccggagactntctcttcccggtttgcaaactgatatcgccaataaagctctcctttctactatttagcca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 27 99.0 Weakly correlated
2 ZNF766 24 43.0 Weakly correlated
3 ZNF589 11 28.9 Weakly correlated
4 ZNF197 9 99.0 Weakly correlated
5 ZNF18 9 160.0 Weakly correlated
6 ZFP37 7 99.0 Weakly correlated
7 ZNF394 7 99.0 Weakly correlated
8 ZKSCAN8 7 160.0 Weakly correlated
9 ZNF175 7 94.0 Weakly correlated
10 ZNF584 6 99.0 Weakly correlated
11 ZNF263 6 180.0 Weakly correlated
12 ZNF2 4 99.0 Weakly correlated
13 ZIM3 4 87.0 Weakly correlated
14 ZFP69B 4 99.0 Weakly correlated
15 ZNF101 3 43.0 Weakly correlated
16 ZNF324 3 99.0 Weakly correlated
17 ZKSCAN1 3 160.0 Weakly correlated
18 ZNF528 3 43.0 Weakly correlated
19 ZNF778 2 74.0 Highly correlated
20 ZNF780B 2 74.0 Highly correlated
21 ZNF705D 2 28.9 Weakly correlated
22 ZNF680 2 28.9 Weakly correlated
23 ZNF610 2 28.9 Weakly correlated
24 ZNF597 2 94.0 Weakly correlated
25 ZNF92 2 28.9 Weakly correlated
26 ZNF534 2 19.6 Weakly correlated
27 ZNF441 2 43.0 Weakly correlated
28 ZNF317 2 99.0 Weakly correlated
29 ZNF585B 1 99.0 Weakly correlated
30 ZNF554 1 99.0 Weakly correlated
31 ZNF490 1 43.0 Weakly correlated
32 ZNF641 1 99.0 Weakly correlated
33 ZNF679 1 28.9 Weakly correlated
34 ZNF479 1 6.4 Weakly correlated
35 ZNF701 1 28.9 Weakly correlated
36 ZNF705B 1 28.9 Weakly correlated
37 ZNF17 1 69.0 Moderately correlated
38 ZNF114 1 28.9 Weakly correlated
39 ZFP30 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 5 43.0 Weakly correlated
2 ZIM3 2 87.0 Weakly correlated
3 ZFP37 1 99.0 Weakly correlated
4 ZNF101 1 43.0 Weakly correlated
5 ZNF92 1 28.9 Weakly correlated
6 ZNF18 1 160.0 Weakly correlated
7 ZNF680 1 28.9 Weakly correlated
8 ZNF679 1 28.9 Weakly correlated
9 ZNF705D 1 28.9 Weakly correlated
10 ZNF382 1 99.0 Weakly correlated
11 ZNF490 1 43.0 Weakly correlated
12 ZNF534 1 19.6 Weakly correlated
13 ZNF589 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats