ZRdb KZFP & Repeats
...

LTR_LTR50

  • Name
    LTR50
  • Repbase
    LTR50
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000541
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgccggttattaagctattgtctctcagctccaaacccacccttctatactctgctttgtgatgctggggctgggactcgnnnntgcaaaccacatttctgctttgccagctggctctccctgttaggctctgccaatagggggcgctagagggagactgcaaggggctggaggggaggaagaagggacttgctccttcctgtctgctnctgtttcctgtctgcttcctgttcctgtcagcgtcaccccagcaacgcttcttcaccctggcagcagtngcttccagttnnttccagcagcagcagttgantccagtttgcgnngttccagtttccancantttttcccaacactcncagaaccagcctcatcgcgccccctcnnnnncctcagagacaccagcaccagccgggcagcgccccctcctcagaggtctgggtcccagctccgcggggcccctcctccgagctcagagacaccagcaccagccgggcagcgccccctcctcagaggtctgagntcccagctccgcggggcccctcctccaagcttctaagttttaataattccaacctcttcccttttgttcccccagccctaggggncgntggtagctgcttcctgcagttgctacctccgtgataccttagtgttctctttttgccttttcagttctctaatnnacaactttatacctagttaacccgnnttaacaattctttatattaaattctctctgttaaaataactggtgtggtttctgtcttctcctgactggaccctgactgataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 217 99.0 Highly correlated
2 ZNF263 184 180.0 Weakly correlated
3 ZNF766 120 43.0 Weakly correlated
4 ZKSCAN1 74 160.0 Weakly correlated
5 ZNF2 71 99.0 Highly correlated
6 ZNF394 54 99.0 Highly correlated
7 ZNF793 45 99.0 Highly correlated
8 ZNF175 44 94.0 Moderately correlated
9 ZNF197 44 99.0 Highly correlated
10 ZNF680 42 28.9 Weakly correlated
11 ZNF589 41 28.9 Weakly correlated
12 ZIM3 40 87.0 Moderately correlated
13 ZFP37 35 99.0 Highly correlated
14 ZNF18 35 160.0 Weakly correlated
15 ZNF573 33 94.0 Moderately correlated
16 ZNF343 31 74.0 Weakly correlated
17 ZNF679 31 28.9 Weakly correlated
18 ZNF479 30 6.4 Weakly correlated
19 ZNF324 29 99.0 Highly correlated
20 ZKSCAN8 28 160.0 Weakly correlated
21 ZNF317 28 99.0 Highly correlated
22 ZNF534 27 19.6 Weakly correlated
23 ZNF584 27 99.0 Highly correlated
24 ZNF101 25 43.0 Weakly correlated
25 ZNF554 22 99.0 Highly correlated
26 ZNF701 22 28.9 Weakly correlated
27 ZFP69B 17 99.0 Highly correlated
28 ZNF610 16 28.9 Weakly correlated
29 ZNF75A 15 94.0 Moderately correlated
30 ZNF597 14 94.0 Moderately correlated
31 ZNF320 12 28.9 Weakly correlated
32 ZNF33B 12 99.0 Highly correlated
33 ZNF558 12 99.0 Highly correlated
34 ZNF705B 12 28.9 Weakly correlated
35 ZNF549 11 87.0 Moderately correlated
36 ZNF723 10 15.2 Weakly correlated
37 ZNF528 9 43.0 Weakly correlated
38 ZNF682 9 28.9 Weakly correlated
39 ZNF257 8 0.0 Weakly correlated
40 ZNF519 8 19.6 Weakly correlated
41 ZNF75D 8 94.0 Moderately correlated
42 ZNF251 7 94.0 Moderately correlated
43 ZNF331 7 94.0 Moderately correlated
44 ZNF695 7 28.9 Weakly correlated
45 ZNF705D 7 28.9 Weakly correlated
46 ZNF140 6 99.0 Highly correlated
47 ZNF230 6 28.9 Weakly correlated
48 ZNF274 6 99.0 Highly correlated
49 ZNF28 6 28.9 Weakly correlated
50 ZNF585A 6 99.0 Highly correlated
51 ZNF84 6 99.0 Highly correlated
52 ZNF273 5 28.9 Weakly correlated
53 ZNF44 5 43.0 Weakly correlated
54 ZNF468 5 28.9 Weakly correlated
55 ZNF485 5 94.0 Moderately correlated
56 ZNF490 5 43.0 Weakly correlated
57 ZFP57 4 87.0 Moderately correlated
58 ZNF141 4 43.0 Weakly correlated
59 ZNF182 4 99.0 Highly correlated
60 ZNF189 4 99.0 Highly correlated
61 ZNF429 4 28.9 Weakly correlated
62 ZNF486 4 8.6 Weakly correlated
63 ZNF677 4 99.0 Highly correlated
64 ZNF700 4 28.9 Weakly correlated
65 ZNF792 4 94.0 Moderately correlated
66 RBAK 3 99.0 Highly correlated
67 ZNF17 3 69.0 Weakly correlated
68 ZNF425 3 94.0 Moderately correlated
69 ZNF441 3 43.0 Weakly correlated
70 ZNF506 3 28.9 Weakly correlated
71 ZNF510 3 99.0 Highly correlated
72 ZNF547 3 74.0 Weakly correlated
73 ZNF550 3 94.0 Moderately correlated
74 ZNF560 3 43.0 Weakly correlated
75 ZNF563 3 28.9 Weakly correlated
76 ZNF669 3 43.0 Weakly correlated
77 ZNF671 3 94.0 Moderately correlated
78 ZNF684 3 99.0 Highly correlated
79 ZNF776 3 43.0 Weakly correlated
80 ZNF823 3 43.0 Weakly correlated
81 ZNF92 3 28.9 Weakly correlated
82 ZNF93 3 8.6 Weakly correlated
83 ZFP30 2 99.0 Highly correlated
84 ZKSCAN5 2 160.0 Weakly correlated
85 ZNF124 2 43.0 Weakly correlated
86 ZNF133 2 99.0 Highly correlated
87 ZNF169 2 94.0 Moderately correlated
88 ZNF222 2 43.0 Weakly correlated
89 ZNF224 2 69.0 Weakly correlated
90 ZNF264 2 99.0 Highly correlated
91 ZNF284 2 43.0 Weakly correlated
92 ZNF3 2 160.0 Weakly correlated
93 ZNF418 2 43.0 Weakly correlated
94 ZNF431 2 28.9 Weakly correlated
95 ZNF440 2 28.9 Weakly correlated
96 ZNF585B 2 99.0 Highly correlated
97 ZNF605 2 99.0 Highly correlated
98 ZNF674 2 99.0 Highly correlated
99 ZNF707 2 74.0 Weakly correlated
100 ZNF735 2 28.9 Weakly correlated
101 ZNF786 2 99.0 Highly correlated
102 ZNF808 2 19.6 Weakly correlated
103 ZNF816 2 28.9 Weakly correlated
104 ZFP28 1 99.0 Highly correlated
105 ZFP69 1 99.0 Highly correlated
106 ZNF114 1 28.9 Weakly correlated
107 ZNF12 1 99.0 Highly correlated
108 ZNF157 1 99.0 Highly correlated
109 ZNF19 1 99.0 Highly correlated
110 ZNF304 1 99.0 Highly correlated
111 ZNF30 1 94.0 Moderately correlated
112 ZNF337 1 43.0 Weakly correlated
113 ZNF347 1 43.0 Weakly correlated
114 ZNF34 1 99.0 Highly correlated
115 ZNF483 1 99.0 Highly correlated
116 ZNF555 1 94.0 Moderately correlated
117 ZNF564 1 74.0 Weakly correlated
118 ZNF565 1 99.0 Highly correlated
119 ZNF567 1 99.0 Highly correlated
120 ZNF568 1 99.0 Highly correlated
121 ZNF611 1 19.6 Weakly correlated
122 ZNF616 1 43.0 Weakly correlated
123 ZNF627 1 74.0 Weakly correlated
124 ZNF641 1 99.0 Highly correlated
125 ZNF675 1 8.6 Weakly correlated
126 ZNF716 1 19.6 Weakly correlated
127 ZNF747 1 43.0 Weakly correlated
128 ZNF780B 1 74.0 Weakly correlated
129 ZNF7 1 99.0 Highly correlated
130 ZNF850 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF263 45 180.0 Weakly correlated
2 ZNF573 30 94.0 Moderately correlated
3 ZNF2 25 99.0 Highly correlated
4 ZIM3 20 87.0 Moderately correlated
5 ZNF680 16 28.9 Weakly correlated
6 ZNF793 16 99.0 Highly correlated
7 ZNF534 12 19.6 Weakly correlated
8 ZNF343 12 74.0 Weakly correlated
9 ZNF479 11 6.4 Weakly correlated
10 ZNF75A 11 94.0 Moderately correlated
11 ZNF723 8 15.2 Weakly correlated
12 ZNF33B 7 99.0 Highly correlated
13 ZNF679 7 28.9 Weakly correlated
14 ZNF610 6 28.9 Weakly correlated
15 ZNF317 5 99.0 Highly correlated
16 ZNF766 5 43.0 Weakly correlated
17 ZNF584 4 99.0 Highly correlated
18 ZNF197 4 99.0 Highly correlated
19 ZNF589 4 28.9 Weakly correlated
20 ZNF320 4 28.9 Weakly correlated
21 ZNF101 4 43.0 Weakly correlated
22 ZKSCAN1 4 160.0 Weakly correlated
23 ZNF382 4 99.0 Highly correlated
24 ZNF175 4 94.0 Moderately correlated
25 ZNF468 3 28.9 Weakly correlated
26 ZNF506 3 28.9 Weakly correlated
27 ZNF44 3 43.0 Weakly correlated
28 ZNF75D 3 94.0 Moderately correlated
29 ZNF28 2 28.9 Weakly correlated
30 ZNF677 2 99.0 Highly correlated
31 ZFP69B 2 99.0 Highly correlated
32 ZNF324 2 99.0 Highly correlated
33 ZNF440 2 28.9 Weakly correlated
34 ZNF549 2 87.0 Moderately correlated
35 ZNF701 2 28.9 Weakly correlated
36 ZNF823 2 43.0 Weakly correlated
37 ZNF189 2 99.0 Highly correlated
38 ZNF257 2 0.0 Weakly correlated
39 ZNF554 2 99.0 Highly correlated
40 ZFP57 2 87.0 Moderately correlated
41 ZKSCAN8 2 160.0 Weakly correlated
42 ZNF141 2 43.0 Weakly correlated
43 ZNF597 2 94.0 Moderately correlated
44 ZNF273 2 28.9 Weakly correlated
45 ZNF490 2 43.0 Weakly correlated
46 ZNF528 2 43.0 Weakly correlated
47 ZNF695 2 28.9 Weakly correlated
48 ZNF331 2 94.0 Moderately correlated
49 ZNF585A 1 99.0 Highly correlated
50 ZNF84 1 99.0 Highly correlated
51 ZNF682 1 28.9 Weakly correlated
52 ZFP69 1 99.0 Highly correlated
53 ZNF560 1 43.0 Weakly correlated
54 ZNF550 1 94.0 Moderately correlated
55 ZKSCAN5 1 160.0 Weakly correlated
56 ZNF674 1 99.0 Highly correlated
57 ZNF140 1 99.0 Highly correlated
58 ZNF347 1 43.0 Weakly correlated
59 ZNF264 1 99.0 Highly correlated
60 ZNF485 1 94.0 Moderately correlated
61 ZNF671 1 94.0 Moderately correlated
62 ZNF735 1 28.9 Weakly correlated
63 ZNF394 1 99.0 Highly correlated
64 ZNF519 1 19.6 Weakly correlated
65 ZNF251 1 94.0 Moderately correlated
66 ZNF34 1 99.0 Highly correlated
67 ZNF705D 1 28.9 Weakly correlated
68 ZNF792 1 94.0 Moderately correlated
69 ZNF684 1 99.0 Highly correlated
70 ZNF675 1 8.6 Weakly correlated
71 ZNF669 1 43.0 Weakly correlated
72 ZNF567 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZIM3 87.0 Moderately correlated
2 ZNF263 180.0 Weakly correlated
3 ZNF2 99.0 Highly correlated
4 ZNF33B 99.0 Highly correlated
5 ZNF343 74.0 Weakly correlated
6 ZNF479 6.4 Weakly correlated
7 ZNF573 94.0 Moderately correlated
8 ZNF679 28.9 Weakly correlated
9 ZNF75A 94.0 Moderately correlated
10 ZNF793 99.0 Highly correlated