ZRdb KZFP & Repeats
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LTR_LTR49

  • Name
    LTR49
  • Repbase
    LTR49
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000538
Description :

LTR49 is a putative LTR of the retroelement related to theMER4/41/57/65-int group. LTR49 is presumably a result of recombinationsbetween MER4D and LTR29 related retroviruses. LTR49 family can besubdivided into three minor subfamilies. LTR49 has 4 bp TSDs.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgaaggaaatcaaaatattttaccccaaaatatacttctttgacatatttcgagatggctgttcagagggcctgcaaacagaagtagccctgcaaagctgtcttttgtgggggagatttgcatctgtagagaaaatctgcattgatgcagccaggctttctctgaggccctcccttgtccggatctaggaaagattaactgagagtctgacacctttaaaggtctgaaagaaacatttaccatctattctctctgagggctgctacctgtgaggtttcatctacataacaagaccacctttgctagccaggcctcctcttctctccctcccataacctgtcttgccactanaacctgatttaccaccataacctgttttnggccatgctccgagcccccattctttctgtaacctcaagatggtatataagcttctgtaccccattggggggnnntttgggtantcactctgattctcccgtgtgtgcacgttaataaatttgtatgccttttctcctattaatctgccttttgtcagttgatttttcagcgaaccttcagagggcgaaggggaagttttcccttggcccctaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF679 20 28.9 Weakly correlated
2 ZNF766 15 43.0 Weakly correlated
3 ZNF695 15 28.9 Weakly correlated
4 ZNF530 12 28.9 Weakly correlated
5 ZNF793 10 99.0 Weakly correlated
6 ZNF394 9 99.0 Weakly correlated
7 ZNF257 8 0.0 Weakly correlated
8 ZNF705B 8 28.9 Weakly correlated
9 ZNF534 8 19.6 Weakly correlated
10 ZNF317 7 99.0 Weakly correlated
11 ZNF263 7 180.0 Weakly correlated
12 ZNF486 7 8.6 Weakly correlated
13 ZIM3 7 87.0 Weakly correlated
14 ZNF589 6 28.9 Weakly correlated
15 ZNF18 6 160.0 Weakly correlated
16 ZNF382 6 99.0 Weakly correlated
17 ZNF597 5 94.0 Weakly correlated
18 ZNF705D 5 28.9 Weakly correlated
19 ZFP57 5 87.0 Weakly correlated
20 ZNF251 5 94.0 Weakly correlated
21 ZNF197 4 99.0 Weakly correlated
22 ZNF175 4 94.0 Weakly correlated
23 ZNF723 3 15.2 Weakly correlated
24 ZNF101 3 43.0 Weakly correlated
25 ZNF140 3 99.0 Weakly correlated
26 ZNF584 3 99.0 Weakly correlated
27 ZNF701 3 28.9 Weakly correlated
28 ZNF823 3 43.0 Weakly correlated
29 ZNF75D 2 94.0 Weakly correlated
30 ZNF680 2 28.9 Weakly correlated
31 ZFP37 2 99.0 Weakly correlated
32 ZNF320 2 28.9 Weakly correlated
33 ZNF2 2 99.0 Weakly correlated
34 ZNF585B 2 99.0 Weakly correlated
35 ZNF682 2 28.9 Weakly correlated
36 ZNF92 1 28.9 Weakly correlated
37 ZFP69B 1 99.0 Weakly correlated
38 ZKSCAN8 1 160.0 Weakly correlated
39 ZNF808 1 19.6 Weakly correlated
40 ZKSCAN5 1 160.0 Weakly correlated
41 ZKSCAN1 1 160.0 Weakly correlated
42 ZNF716 1 19.6 Weakly correlated
43 ZNF586 1 43.0 Weakly correlated
44 ZNF735 1 28.9 Weakly correlated
45 ZNF736 1 43.0 Weakly correlated
46 ZNF490 1 43.0 Weakly correlated
47 ZNF274 1 99.0 Weakly correlated
48 ZNF354A 1 99.0 Weakly correlated
49 ZNF354B 1 99.0 Weakly correlated
50 ZNF425 1 94.0 Weakly correlated
51 ZNF43 1 43.0 Weakly correlated
52 ZNF440 1 28.9 Weakly correlated
53 ZNF468 1 28.9 Weakly correlated
54 ZNF479 1 6.4 Weakly correlated
55 ZNF610 1 28.9 Weakly correlated
56 ZNF506 1 28.9 Weakly correlated
57 ZNF510 1 99.0 Weakly correlated
58 ZNF528 1 43.0 Weakly correlated
59 ZNF169 1 94.0 Weakly correlated
60 ZNF160 1 74.0 Highly correlated
61 ZNF558 1 99.0 Weakly correlated
62 ZNF133 1 99.0 Weakly correlated
63 ZNF607 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF530 11 28.9 Weakly correlated
2 ZNF534 7 19.6 Weakly correlated
3 ZNF679 5 28.9 Weakly correlated
4 ZNF257 4 0.0 Weakly correlated
5 ZNF793 3 99.0 Weakly correlated
6 ZNF766 3 43.0 Weakly correlated
7 ZNF263 3 180.0 Weakly correlated
8 ZNF705D 2 28.9 Weakly correlated
9 ZNF695 2 28.9 Weakly correlated
10 ZNF705B 2 28.9 Weakly correlated
11 ZNF75D 1 94.0 Weakly correlated
12 ZNF528 1 43.0 Weakly correlated
13 ZNF317 1 99.0 Weakly correlated
14 ZNF506 1 28.9 Weakly correlated
15 ZNF735 1 28.9 Weakly correlated
16 ZNF823 1 43.0 Weakly correlated
17 ZNF680 1 28.9 Weakly correlated
18 ZNF468 1 28.9 Weakly correlated
19 ZKSCAN5 1 160.0 Weakly correlated
20 ZKSCAN1 1 160.0 Weakly correlated
21 ZIM3 1 87.0 Weakly correlated
22 ZFP57 1 87.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats