ZRdb KZFP & Repeats
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LTR_LTR48B

  • Name
    LTR48B
  • Repbase
    LTR48B
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000537
Description :

Partially similar to LTR29, MER34 and MER39.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttggggctcagaaancgataccccaaaatatggcgctttgacatgctgaactgaagaagcagcctcaaggtctctctgacctcccccgcccccctntctctcaatcctctgtctctcccaaagcacaggatgaagctgttctctgaagttcccttatctgcctaaagnccggacccgccaaagaggaanacaattgccttcggtcccttccctgagntttcattaaccggngaagattaaaactcatatcgcagaagaagagactgaagnttgnacaccacacctggagcncagacggactttgtcacaaaccattgtctgctctccggncccattcaattcccaaagagaattatttacnagccattgtctgttcntcgggcccattcattccccctaaaaatcatttactacccctcaaaatnnccacatttcccccatctccccttcccctatgaagaagggtatataagcatctgtaccccattgggttattgggtaatcactctcctgcgattcccccgtgcttatgcacgttaaaataaatttgtatgcctttttctcctattaatctgccttttgtcagttgattttcagcgaaccttcagagggcgaaggggaagttttcccttggcccctaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 29 28.9 Weakly correlated
2 ZNF766 22 43.0 Weakly correlated
3 ZNF382 21 99.0 Weakly correlated
4 ZNF175 9 94.0 Weakly correlated
5 ZNF679 7 28.9 Weakly correlated
6 ZNF534 7 19.6 Weakly correlated
7 ZNF320 7 28.9 Weakly correlated
8 ZNF589 6 28.9 Weakly correlated
9 ZNF705B 5 28.9 Weakly correlated
10 ZNF479 5 6.4 Weakly correlated
11 ZNF735 5 28.9 Weakly correlated
12 ZNF75D 5 94.0 Weakly correlated
13 ZNF263 4 180.0 Weakly correlated
14 ZNF486 4 8.6 Weakly correlated
15 ZNF485 4 94.0 Weakly correlated
16 ZNF394 4 99.0 Weakly correlated
17 ZNF793 4 99.0 Weakly correlated
18 ZNF257 4 0.0 Weakly correlated
19 ZNF317 3 99.0 Weakly correlated
20 ZNF723 3 15.2 Weakly correlated
21 ZNF705D 3 28.9 Weakly correlated
22 ZNF92 2 28.9 Weakly correlated
23 ZNF468 2 28.9 Weakly correlated
24 ZNF823 2 43.0 Weakly correlated
25 ZNF251 2 94.0 Weakly correlated
26 ZNF607 2 43.0 Weakly correlated
27 ZFP28 2 99.0 Weakly correlated
28 ZNF554 2 99.0 Weakly correlated
29 ZNF716 2 19.6 Weakly correlated
30 ZNF585A 2 99.0 Weakly correlated
31 ZIM3 2 87.0 Weakly correlated
32 ZNF597 2 94.0 Weakly correlated
33 ZNF93 1 8.6 Weakly correlated
34 ZNF547 1 74.0 Highly correlated
35 ZNF84 1 99.0 Weakly correlated
36 ZNF816 1 28.9 Weakly correlated
37 ZNF780A 1 43.0 Weakly correlated
38 ZNF74 1 99.0 Weakly correlated
39 ZNF789 1 99.0 Weakly correlated
40 ZNF26 1 99.0 Weakly correlated
41 ZFP37 1 99.0 Weakly correlated
42 ZFP57 1 87.0 Weakly correlated
43 ZKSCAN1 1 160.0 Weakly correlated
44 ZKSCAN8 1 160.0 Weakly correlated
45 ZNF101 1 43.0 Weakly correlated
46 ZNF133 1 99.0 Weakly correlated
47 ZNF141 1 43.0 Weakly correlated
48 ZNF224 1 69.0 Moderately correlated
49 ZNF701 1 28.9 Weakly correlated
50 ZNF273 1 28.9 Weakly correlated
51 ZNF274 1 99.0 Weakly correlated
52 ZNF436 1 180.0 Weakly correlated
53 ZNF506 1 28.9 Weakly correlated
54 ZNF584 1 99.0 Weakly correlated
55 ZNF681 1 28.9 Weakly correlated
56 ZNF700 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 8 28.9 Weakly correlated
2 ZNF534 5 19.6 Weakly correlated
3 ZNF735 5 28.9 Weakly correlated
4 ZNF479 4 6.4 Weakly correlated
5 ZNF485 2 94.0 Weakly correlated
6 ZNF589 2 28.9 Weakly correlated
7 ZNF75D 2 94.0 Weakly correlated
8 ZNF263 2 180.0 Weakly correlated
9 ZNF320 2 28.9 Weakly correlated
10 ZNF793 2 99.0 Weakly correlated
11 ZNF468 2 28.9 Weakly correlated
12 ZNF92 1 28.9 Weakly correlated
13 ZIM3 1 87.0 Weakly correlated
14 ZNF823 1 43.0 Weakly correlated
15 ZNF679 1 28.9 Weakly correlated
16 ZNF597 1 94.0 Weakly correlated
17 ZNF175 1 94.0 Weakly correlated
18 ZNF585A 1 99.0 Weakly correlated
19 ZNF317 1 99.0 Weakly correlated
20 ZNF257 1 0.0 Weakly correlated
21 ZNF141 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF680 28.9 Weakly correlated