ZRdb KZFP & Repeats
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LTR_LTR48

  • Name
    LTR48
  • Repbase
    LTR48
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000536
Description :

At orthologous sites in tarsiers and prosimians, but absent fromtreeshrews and glires.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttggggctcagaaaataccccaaagtatggcgctttggcatgctgagcgctttgaactaaaggaaattggaaggccttagaagcngccntcagaaccaaggtctctctctgaccttctcttgcctccctgtctctctgcccctctttctttccccaagcgcagggaggggctctctctggaatttccttatctgactaaggaaacttctttccaaaagaaatgcaattgtcttaaanccccctccctaggaatctcatcaaataaccaggaaagattaaccacnngagaagagaagagactaaaagtcgtcacgnncgcgncgccacgcccagacagacttttcatcgnntattcttctgagggcagctccgagagattacctgggagactttnnatctgcataataagacaacctttgttcacagtgcagttccgcccctcaccttcccgtaacttgtnnnncaccacctcccccagagcccagaggaactttgtcccaggccattgntctgttctttgggcccattcatttcccctaaaaatcatttactacccctctaaaattgcctacatcccccccatttccctctcccctatgaagagggtatttaagcttcaaccatctggcccttctttgagtctcatatncgttttgtatgactcccgtgtncatatgcacgttaataaatttgtatgccttttctcctgttaatctgtctattgtcagttcatttcagcaaaccttcagaggggacagaggggaagctttcccttcgcccctaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF530 77 28.9 Weakly correlated
2 ZNF382 27 99.0 Weakly correlated
3 ZNF705B 16 28.9 Weakly correlated
4 ZNF766 14 43.0 Weakly correlated
5 ZNF679 13 28.9 Weakly correlated
6 ZNF394 12 99.0 Weakly correlated
7 ZFP37 10 99.0 Weakly correlated
8 ZNF680 10 28.9 Weakly correlated
9 ZNF140 10 99.0 Weakly correlated
10 ZNF2 8 99.0 Weakly correlated
11 ZNF101 7 43.0 Weakly correlated
12 ZNF18 7 160.0 Weakly correlated
13 ZNF534 6 19.6 Weakly correlated
14 ZNF263 6 180.0 Weakly correlated
15 ZFP69B 5 99.0 Weakly correlated
16 ZNF479 5 6.4 Weakly correlated
17 ZNF175 5 94.0 Weakly correlated
18 ZNF823 4 43.0 Weakly correlated
19 ZNF324 4 99.0 Weakly correlated
20 ZNF705D 4 28.9 Weakly correlated
21 ZKSCAN1 4 160.0 Weakly correlated
22 ZNF317 3 99.0 Weakly correlated
23 ZNF792 3 94.0 Weakly correlated
24 ZNF778 3 74.0 Highly correlated
25 ZNF75D 3 94.0 Weakly correlated
26 ZNF610 3 28.9 Weakly correlated
27 ZNF723 2 15.2 Weakly correlated
28 ZNF558 2 99.0 Weakly correlated
29 ZNF589 2 28.9 Weakly correlated
30 ZKSCAN5 2 160.0 Weakly correlated
31 ZNF682 2 28.9 Weakly correlated
32 ZNF707 2 74.0 Highly correlated
33 ZNF264 2 99.0 Weakly correlated
34 ZNF793 2 99.0 Weakly correlated
35 ZNF92 2 28.9 Weakly correlated
36 ZNF425 2 94.0 Weakly correlated
37 ZNF331 2 94.0 Weakly correlated
38 ZNF528 2 43.0 Weakly correlated
39 ZNF337 1 43.0 Weakly correlated
40 ZNF44 1 43.0 Weakly correlated
41 ZNF429 1 28.9 Weakly correlated
42 ZNF182 1 99.0 Weakly correlated
43 ZNF727 1 19.6 Weakly correlated
44 ZNF735 1 28.9 Weakly correlated
45 ZNF197 1 99.0 Weakly correlated
46 ZIM3 1 87.0 Weakly correlated
47 ZNF695 1 28.9 Weakly correlated
48 ZNF786 1 99.0 Weakly correlated
49 ZNF202 1 160.0 Weakly correlated
50 ZNF283 1 99.0 Weakly correlated
51 ZNF8 1 99.0 Weakly correlated
52 ZNF91 1 6.0 Weakly correlated
53 ZNF251 1 94.0 Weakly correlated
54 ZNF486 1 8.6 Weakly correlated
55 ZNF549 1 87.0 Weakly correlated
56 ZNF554 1 99.0 Weakly correlated
57 ZNF169 1 94.0 Weakly correlated
58 ZNF573 1 94.0 Weakly correlated
59 ZNF578 1 15.2 Weakly correlated
60 ZNF587 1 28.9 Weakly correlated
61 ZNF597 1 94.0 Weakly correlated
62 ZNF605 1 99.0 Weakly correlated
63 ZNF701 1 28.9 Weakly correlated
64 ZNF611 1 19.6 Weakly correlated
65 ZNF627 1 74.0 Highly correlated
66 ZNF667 1 99.0 Weakly correlated
67 ZKSCAN8 1 160.0 Weakly correlated
68 ZNF471 1 94.0 Weakly correlated
69 ZNF468 1 28.9 Weakly correlated
70 ZNF141 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF530 66 28.9 Weakly correlated
2 ZNF534 5 19.6 Weakly correlated
3 ZNF680 4 28.9 Weakly correlated
4 ZNF263 3 180.0 Weakly correlated
5 ZNF2 3 99.0 Weakly correlated
6 ZNF679 2 28.9 Weakly correlated
7 ZNF766 2 43.0 Weakly correlated
8 ZKSCAN5 2 160.0 Weakly correlated
9 ZNF18 1 160.0 Weakly correlated
10 ZNF627 1 74.0 Highly correlated
11 ZNF283 1 99.0 Weakly correlated
12 ZNF429 1 28.9 Weakly correlated
13 ZNF611 1 19.6 Weakly correlated
14 ZNF75D 1 94.0 Weakly correlated
15 ZNF667 1 99.0 Weakly correlated
16 ZNF735 1 28.9 Weakly correlated
17 ZNF91 1 6.0 Weakly correlated
18 ZNF425 1 94.0 Weakly correlated
19 ZNF573 1 94.0 Weakly correlated
20 ZNF778 1 74.0 Highly correlated
21 ZNF175 1 94.0 Weakly correlated
22 ZNF705D 1 28.9 Weakly correlated
23 ZNF589 1 28.9 Weakly correlated
24 ZNF549 1 87.0 Weakly correlated
25 ZNF597 1 94.0 Weakly correlated
26 ZNF793 1 99.0 Weakly correlated
27 ZNF701 1 28.9 Weakly correlated
28 ZNF587 1 28.9 Weakly correlated
29 ZNF202 1 160.0 Weakly correlated
30 ZNF140 1 99.0 Weakly correlated
31 ZNF101 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats