ZRdb KZFP & Repeats
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LTR_LTR47A2

  • Name
    LTR47A2
  • Repbase
    LTR47A2
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000531
Description :

The 5' half is different from other LTR47 subfamilies.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtaggaaaacagcctgttgcatggcaagagtgacgccatcttgaagcgaaaccgccatgatgaccgatgtttgactcctgcataccaaggtgttctgcagcaaggtctttaaacaatgcctgtagcatagataacccctcataaagatgcttatctaacctccccagtggtcacgagtttcggcaagaaagtctgagacgtgaccagctgcacatgtctttaccctaaaagcttgctatataaaggatactttctggagggcgggtgcaggggatccaccgtctcgcggccgcccgagacatcgcttctgttcgtaagtccctattaaatgtttctttctgagaaactggatttgtcagcctctttcttcggcctctcagctccctcggcctttgggggtaggtttgcatagacctgctcaccgcggaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 28 43.0 Weakly correlated
2 ZNF589 12 28.9 Weakly correlated
3 ZNF382 11 99.0 Weakly correlated
4 ZNF197 9 99.0 Weakly correlated
5 ZNF584 8 99.0 Weakly correlated
6 ZNF175 8 94.0 Weakly correlated
7 ZKSCAN8 6 160.0 Weakly correlated
8 ZFP69B 4 99.0 Weakly correlated
9 ZKSCAN1 4 160.0 Weakly correlated
10 ZNF394 4 99.0 Weakly correlated
11 ZNF610 3 28.9 Weakly correlated
12 ZNF324 3 99.0 Weakly correlated
13 ZNF18 3 160.0 Weakly correlated
14 ZNF101 3 43.0 Weakly correlated
15 ZNF274 2 99.0 Weakly correlated
16 ZNF317 2 99.0 Weakly correlated
17 ZNF264 2 99.0 Weakly correlated
18 ZNF263 2 180.0 Weakly correlated
19 ZNF554 2 99.0 Weakly correlated
20 ZNF558 2 99.0 Weakly correlated
21 ZFP37 2 99.0 Weakly correlated
22 ZNF682 2 28.9 Weakly correlated
23 ZNF75A 1 94.0 Weakly correlated
24 ZNF707 1 74.0 Highly correlated
25 ZNF705D 1 28.9 Weakly correlated
26 ZNF701 1 28.9 Weakly correlated
27 ZNF684 1 99.0 Weakly correlated
28 ZNF8 1 99.0 Weakly correlated
29 ZNF679 1 28.9 Weakly correlated
30 ZNF597 1 94.0 Weakly correlated
31 ZNF534 1 19.6 Weakly correlated
32 ZNF479 1 6.4 Weakly correlated
33 ZNF471 1 94.0 Weakly correlated
34 ZNF440 1 28.9 Weakly correlated
35 ZNF2 1 99.0 Weakly correlated
36 ZNF230 1 28.9 Weakly correlated
37 ZIM3 1 87.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 6 43.0 Weakly correlated
2 ZNF589 5 28.9 Weakly correlated
3 ZNF197 3 99.0 Weakly correlated
4 ZKSCAN8 2 160.0 Weakly correlated
5 ZNF175 2 94.0 Weakly correlated
6 ZNF584 2 99.0 Weakly correlated
7 ZNF317 2 99.0 Weakly correlated
8 ZNF440 1 28.9 Weakly correlated
9 ZNF534 1 19.6 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats