ZRdb KZFP & Repeats
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LTR_LTR47A

  • Name
    LTR47A
  • Repbase
    LTR47A
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000530
Description :

Solo LTR47A elements are flanked by 5 bp TSDs. LTR47A sequences belongpresumably to the endogenous retrovirus HERV47 related to the mouseretrovirus MERVL and human retroviruses HERVL and HERV17. Polprotein shows significant similarity to the Pol proteins encoded byMERVL and foamy viruses.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggaggctaaagcaactccatcttggatgctaatccgccatgttgacttctgattaaccccagttccgggaaggcctctaagatttccagtttatctattgttccttgtgtaagagcangtacttaccgtaaatcctgcccttaggtcaaaacaaccttgatgttatcgtacttnccatanntcctgcccttagcaattgtcctacacatcccttctgaancacgtntaccctttccctatggtatataagccctgggtctggggggtaatggcgcggggatccaccatcttgtctcgccgccgcccgagacacagacatggcttctgttcgtaagtccctattaaatgtttctttctgagaaactggatttgtcagcctctttcttcggcctctcagcttcctcggactttcgggggtaggtttgcatagacctgcccaccgcggaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 65 43.0 Weakly correlated
2 ZNF175 52 94.0 Weakly correlated
3 ZNF589 47 28.9 Weakly correlated
4 ZNF197 32 99.0 Weakly correlated
5 ZNF584 25 99.0 Weakly correlated
6 ZKSCAN8 14 160.0 Weakly correlated
7 ZIM3 11 87.0 Weakly correlated
8 ZNF317 10 99.0 Weakly correlated
9 ZNF382 9 99.0 Weakly correlated
10 ZNF394 9 99.0 Weakly correlated
11 ZNF75D 5 94.0 Weakly correlated
12 ZNF18 4 160.0 Weakly correlated
13 ZFP28 4 99.0 Weakly correlated
14 ZNF549 4 87.0 Weakly correlated
15 ZNF436 3 180.0 Weakly correlated
16 ZNF479 3 6.4 Weakly correlated
17 ZNF701 3 28.9 Weakly correlated
18 ZNF331 3 94.0 Weakly correlated
19 ZNF793 3 99.0 Weakly correlated
20 ZKSCAN1 3 160.0 Weakly correlated
21 ZNF506 2 28.9 Weakly correlated
22 ZNF92 2 28.9 Weakly correlated
23 ZNF679 2 28.9 Weakly correlated
24 ZFP57 2 87.0 Weakly correlated
25 ZNF558 2 99.0 Weakly correlated
26 ZNF140 2 99.0 Weakly correlated
27 ZNF534 2 19.6 Weakly correlated
28 ZNF251 2 94.0 Weakly correlated
29 ZNF723 2 15.2 Weakly correlated
30 ZNF263 2 180.0 Weakly correlated
31 ZNF44 1 43.0 Weakly correlated
32 ZNF705B 1 28.9 Weakly correlated
33 ZNF705D 1 28.9 Weakly correlated
34 ZNF879 1 99.0 Weakly correlated
35 ZNF735 1 28.9 Weakly correlated
36 ZNF75A 1 94.0 Weakly correlated
37 ZNF585B 1 99.0 Weakly correlated
38 ZNF567 1 99.0 Weakly correlated
39 ZNF519 1 19.6 Weakly correlated
40 ZNF486 1 8.6 Weakly correlated
41 ZNF441 1 43.0 Weakly correlated
42 ZNF440 1 28.9 Weakly correlated
43 ZNF324 1 99.0 Weakly correlated
44 ZNF28 1 28.9 Weakly correlated
45 ZNF274 1 99.0 Weakly correlated
46 ZNF257 1 0.0 Weakly correlated
47 ZNF184 1 99.0 Weakly correlated
48 ZFP37 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 4 87.0 Weakly correlated
2 ZNF175 4 94.0 Weakly correlated
3 ZNF197 3 99.0 Weakly correlated
4 ZNF436 3 180.0 Weakly correlated
5 ZNF549 2 87.0 Weakly correlated
6 ZNF584 2 99.0 Weakly correlated
7 ZNF701 2 28.9 Weakly correlated
8 ZFP28 1 99.0 Weakly correlated
9 ZNF479 1 6.4 Weakly correlated
10 ZNF534 1 19.6 Weakly correlated
11 ZNF28 1 28.9 Weakly correlated
12 ZNF317 1 99.0 Weakly correlated
13 ZNF589 1 28.9 Weakly correlated
14 ZNF263 1 180.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats