ZRdb KZFP & Repeats
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LTR_LTR46

  • Name
    LTR46
  • Repbase
    LTR46
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000528
Description :

3' end starting at position 282 distantly similar to LTR19A/B.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttagtccaaactgcaccattttgtaagccccccgccatttcgcagaccttggtcaaagtgaaacattccacgggggttcgggccgtgagaaacatcctgcctaaccacctgaccacaaggcggacaaaggcccaactaaagaaacatccctatcatatcctgctgggcaaaggtccaaggaacaccacgatgacatcccgccggaacaagggccagaaccgcctcatcatgggaacatcttatcaatatcctgccgggcagcaagccatactgcccagacccctcccgcccatacctataagttaccccagcctgtaagcggcggtgggctctggcattaagctggtcccccacctccgcaggttttatgctggacataaagcctgcgtttgctgtngagccgccctctctctctgtgtgtctttctttaaccctcgccttcccttcaaaacctaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 48 43.0 Highly correlated
2 ZNF589 33 28.9 Moderately correlated
3 ZNF175 32 94.0 Weakly correlated
4 ZKSCAN8 25 160.0 Weakly correlated
5 ZNF584 19 99.0 Weakly correlated
6 ZNF197 19 99.0 Weakly correlated
7 ZNF382 15 99.0 Weakly correlated
8 ZNF18 11 160.0 Weakly correlated
9 ZKSCAN1 9 160.0 Weakly correlated
10 ZNF394 7 99.0 Weakly correlated
11 ZFP37 7 99.0 Weakly correlated
12 ZNF680 5 28.9 Moderately correlated
13 ZNF2 5 99.0 Weakly correlated
14 ZNF705B 4 28.9 Moderately correlated
15 ZNF324 4 99.0 Weakly correlated
16 ZNF597 3 94.0 Weakly correlated
17 ZNF263 3 180.0 Weakly correlated
18 ZNF101 3 43.0 Highly correlated
19 ZNF429 3 28.9 Moderately correlated
20 ZFP69B 3 99.0 Weakly correlated
21 ZIM3 3 87.0 Weakly correlated
22 ZNF610 2 28.9 Moderately correlated
23 ZFP57 2 87.0 Weakly correlated
24 ZNF641 2 99.0 Weakly correlated
25 ZNF558 2 99.0 Weakly correlated
26 ZNF723 2 15.2 Weakly correlated
27 ZNF528 2 43.0 Highly correlated
28 ZNF778 2 74.0 Weakly correlated
29 ZNF445 2 99.0 Weakly correlated
30 ZNF141 2 43.0 Highly correlated
31 ZNF793 2 99.0 Weakly correlated
32 ZNF84 2 99.0 Weakly correlated
33 ZNF274 2 99.0 Weakly correlated
34 ZNF701 1 28.9 Moderately correlated
35 ZNF93 1 8.6 Weakly correlated
36 ZNF705D 1 28.9 Moderately correlated
37 ZNF747 1 43.0 Highly correlated
38 ZNF816 1 28.9 Moderately correlated
39 ZNF679 1 28.9 Moderately correlated
40 ZNF585B 1 99.0 Weakly correlated
41 ZNF585A 1 99.0 Weakly correlated
42 ZNF554 1 99.0 Weakly correlated
43 ZNF490 1 43.0 Highly correlated
44 ZNF486 1 8.6 Weakly correlated
45 ZNF485 1 94.0 Weakly correlated
46 ZNF317 1 99.0 Weakly correlated
47 ZNF302 1 43.0 Highly correlated
48 ZNF182 1 99.0 Weakly correlated
49 ZNF133 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF175 11 94.0 Weakly correlated
2 ZNF589 10 28.9 Moderately correlated
3 ZNF766 10 43.0 Highly correlated
4 ZNF584 7 99.0 Weakly correlated
5 ZNF197 3 99.0 Weakly correlated
6 ZNF429 3 28.9 Moderately correlated
7 ZNF382 2 99.0 Weakly correlated
8 ZNF705B 2 28.9 Moderately correlated
9 ZIM3 1 87.0 Weakly correlated
10 ZNF485 1 94.0 Weakly correlated
11 ZNF263 1 180.0 Weakly correlated
12 ZNF723 1 15.2 Weakly correlated
13 ZNF816 1 28.9 Moderately correlated
14 ZNF793 1 99.0 Weakly correlated
15 ZNF747 1 43.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF175 94.0 Weakly correlated
2 ZNF584 99.0 Weakly correlated
3 ZNF589 28.9 Moderately correlated