ZRdb KZFP & Repeats
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LTR_LTR45C

  • Name
    LTR45C
  • Repbase
    LTR45C
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000527
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgaaaccgtgccccaaagagttnnnnnnnnnaaagaaaccaatgactaacagaaattcttgagtttgcaggatggcagataagaaaagaaacaacttgctgaaacgctgaaactccctccgcttgtgagataanaaaactggctgaaatcggttggaaccaatatggccgactggagtctgcgcagaacgagcttgctgacgtcacagcctgaatttccaccgcatgtttcatactaactccccccgaatttgcacatgcgacccatgaggnagcatgaagagataactgcgcatgcccgaggactttccagacctcccctttccttccaccaatcacctactaatcccagaatccaccccctaaaccttttctaataaaantactgccttaaagccagcacagggagacagatttgagctggactcctgtctccttgtnagtcgacttgcaataaaaagcttttcttttctcaaaaacccggtgtcatagtattggcttctagcgcatcgggcagcgagccccttttgctcggtaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 66 43.0 Weakly correlated
2 ZNF589 33 28.9 Weakly correlated
3 ZNF175 27 94.0 Moderately correlated
4 ZNF197 26 99.0 Highly correlated
5 ZKSCAN8 21 160.0 Weakly correlated
6 ZNF584 21 99.0 Highly correlated
7 ZNF382 17 99.0 Highly correlated
8 ZKSCAN1 17 160.0 Weakly correlated
9 ZNF808 8 19.6 Weakly correlated
10 ZNF263 7 180.0 Weakly correlated
11 ZNF18 6 160.0 Weakly correlated
12 ZNF394 5 99.0 Highly correlated
13 ZNF558 5 99.0 Highly correlated
14 ZFP37 4 99.0 Highly correlated
15 ZNF680 4 28.9 Weakly correlated
16 ZNF257 4 0.0 Weakly correlated
17 ZNF793 4 99.0 Highly correlated
18 ZIM3 4 87.0 Moderately correlated
19 ZNF723 3 15.2 Weakly correlated
20 ZNF554 3 99.0 Highly correlated
21 ZNF486 3 8.6 Weakly correlated
22 ZNF479 3 6.4 Weakly correlated
23 ZFP57 3 87.0 Moderately correlated
24 ZNF331 3 94.0 Moderately correlated
25 ZNF679 2 28.9 Weakly correlated
26 ZNF610 2 28.9 Weakly correlated
27 ZNF597 2 94.0 Moderately correlated
28 ZNF101 2 43.0 Weakly correlated
29 ZNF274 2 99.0 Highly correlated
30 ZNF264 2 99.0 Highly correlated
31 ZNF320 2 28.9 Weakly correlated
32 ZNF534 2 19.6 Weakly correlated
33 ZNF549 2 87.0 Moderately correlated
34 ZNF251 1 94.0 Moderately correlated
35 ZNF701 1 28.9 Weakly correlated
36 ZNF28 1 28.9 Weakly correlated
37 ZNF140 1 99.0 Highly correlated
38 ZNF786 1 99.0 Highly correlated
39 ZNF799 1 43.0 Weakly correlated
40 ZNF816 1 28.9 Weakly correlated
41 ZNF878 1 43.0 Weakly correlated
42 ZNF440 1 28.9 Weakly correlated
43 ZNF324 1 99.0 Highly correlated
44 ZNF528 1 43.0 Weakly correlated
45 ZNF519 1 19.6 Weakly correlated
46 ZNF506 1 28.9 Weakly correlated
47 ZNF485 1 94.0 Moderately correlated
48 ZNF480 1 43.0 Weakly correlated
49 RBAK 1 99.0 Highly correlated
50 ZNF44 1 43.0 Weakly correlated
51 ZNF441 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF589 15 28.9 Weakly correlated
2 ZNF197 13 99.0 Highly correlated
3 ZNF175 13 94.0 Moderately correlated
4 ZNF584 12 99.0 Highly correlated
5 ZNF766 8 43.0 Weakly correlated
6 ZIM3 2 87.0 Moderately correlated
7 ZNF506 1 28.9 Weakly correlated
8 ZFP57 1 87.0 Moderately correlated
9 ZNF18 1 160.0 Weakly correlated
10 ZNF610 1 28.9 Weakly correlated
11 ZNF680 1 28.9 Weakly correlated
12 ZNF274 1 99.0 Highly correlated
13 ZNF793 1 99.0 Highly correlated
14 ZNF549 1 87.0 Moderately correlated
15 ZNF257 1 0.0 Weakly correlated
16 ZNF597 1 94.0 Moderately correlated
17 ZNF534 1 19.6 Weakly correlated
18 ZNF558 1 99.0 Highly correlated
19 ZNF101 1 43.0 Weakly correlated
20 ZKSCAN1 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF175 94.0 Moderately correlated
2 ZNF197 99.0 Highly correlated
3 ZNF584 99.0 Highly correlated
4 ZNF589 28.9 Weakly correlated