ZRdb KZFP & Repeats
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LTR_LTR45B

  • Name
    LTR45B
  • Repbase
    LTR45B
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000526
Description :

MER4 group.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgtaaccgcaccagaccaatctggttcaacttttatgtaacaaagttgtgagttgtttttcagttgccatggacccccaggttgaaggtcacgtaacctgagcatgcccagatgaaccaagcgtgcaaccacggggggaacctaagtgctcggaccgaggagcggggactgaattaagaagcggacaccgcatggcaggatccaggatccaatcagatcgagccctggcgtcaccccatggcaggatccagtcagatcatgcctcccggcatcaccntcattgcaagatccaatcagatcacgcctcattaccctatgcttataaaacccgacccagcccccagctcggggagacagatttgagcgtttcctcctgtctccttgccagtcgactnacttgcaataaagcttttcttttctcaaaagccggtgccatggtattggcttcgcatcgggcagcantgagcccattgattgctcggtaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 19 99.0 Weakly correlated
2 ZNF766 16 43.0 Weakly correlated
3 ZNF263 12 180.0 Weakly correlated
4 ZFP37 11 99.0 Weakly correlated
5 ZNF558 10 99.0 Weakly correlated
6 ZNF394 10 99.0 Weakly correlated
7 ZNF589 7 28.9 Weakly correlated
8 ZFP69B 6 99.0 Weakly correlated
9 ZNF324 6 99.0 Weakly correlated
10 ZNF671 6 94.0 Weakly correlated
11 ZNF18 6 160.0 Weakly correlated
12 ZIM3 6 87.0 Weakly correlated
13 ZNF175 6 94.0 Weakly correlated
14 ZNF554 5 99.0 Weakly correlated
15 ZNF2 5 99.0 Weakly correlated
16 ZNF101 5 43.0 Weakly correlated
17 ZNF506 4 28.9 Weakly correlated
18 ZNF317 4 99.0 Weakly correlated
19 ZNF584 4 99.0 Weakly correlated
20 ZKSCAN8 4 160.0 Weakly correlated
21 ZNF679 3 28.9 Weakly correlated
22 ZNF441 3 43.0 Weakly correlated
23 ZNF792 2 94.0 Weakly correlated
24 ZNF705D 2 28.9 Weakly correlated
25 ZNF610 2 28.9 Weakly correlated
26 ZNF669 2 43.0 Weakly correlated
27 ZNF479 2 6.4 Weakly correlated
28 ZNF705B 2 28.9 Weakly correlated
29 ZNF695 2 28.9 Weakly correlated
30 ZNF547 2 74.0 Highly correlated
31 ZNF486 2 8.6 Weakly correlated
32 ZNF429 2 28.9 Weakly correlated
33 ZNF320 2 28.9 Weakly correlated
34 ZNF197 2 99.0 Weakly correlated
35 ZNF8 1 99.0 Weakly correlated
36 ZNF534 1 19.6 Weakly correlated
37 ZKSCAN5 1 160.0 Weakly correlated
38 ZNF786 1 99.0 Weakly correlated
39 ZNF778 1 74.0 Highly correlated
40 ZNF140 1 99.0 Weakly correlated
41 ZNF723 1 15.2 Weakly correlated
42 ZNF141 1 43.0 Weakly correlated
43 ZNF17 1 69.0 Moderately correlated
44 ZNF189 1 99.0 Weakly correlated
45 ZNF680 1 28.9 Weakly correlated
46 ZNF251 1 94.0 Weakly correlated
47 ZNF257 1 0.0 Weakly correlated
48 ZNF597 1 94.0 Weakly correlated
49 ZNF468 1 28.9 Weakly correlated
50 ZNF490 1 43.0 Weakly correlated
51 ZNF528 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF671 5 94.0 Weakly correlated
2 ZNF766 4 43.0 Weakly correlated
3 ZNF506 4 28.9 Weakly correlated
4 ZNF263 4 180.0 Weakly correlated
5 ZIM3 2 87.0 Weakly correlated
6 ZNF18 2 160.0 Weakly correlated
7 ZFP37 1 99.0 Weakly correlated
8 ZKSCAN5 1 160.0 Weakly correlated
9 ZNF320 1 28.9 Weakly correlated
10 ZNF554 1 99.0 Weakly correlated
11 ZNF101 1 43.0 Weakly correlated
12 ZNF257 1 0.0 Weakly correlated
13 ZNF251 1 94.0 Weakly correlated
14 ZNF534 1 19.6 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats