ZRdb KZFP & Repeats
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LTR_LTR44

  • Name
    LTR44
  • Repbase
    LTR44
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000524
Description :

4 bp TSDs.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgataacctacaggtcacatttggcaggcttccaaattaacccgcctnggggaggtcttgtgattcatggcnacatcctgtccctgagtaaagaatcttgtgagtccctcaaatcttatcgtgagttcctcaaactgttgacgtactgattaatacgtaacctactgacactgaaaaggacgctgatttgtttctgaatcatgaagttttgctgatttntttctgaatcatgaagttttactgattgtcttgcacgtagacattttagcctgtatgttgcaatctgtagccaatgattgtaacctctgtattgtaccctccaatgaaaaaggacaactccgatatgaggagtccccctcccttctcctaaactttcttataaaagccttccaacttgtaacagactctggaacacgcccaactttgttggtgtgtcttcccgggtcgatcctcacatttggcttccaataaacctttatcaaattatttctgcctcaacagccttaatttcggtcgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 25 99.0 Weakly correlated
2 ZNF766 16 43.0 Weakly correlated
3 ZNF589 14 28.9 Weakly correlated
4 ZNF584 14 99.0 Weakly correlated
5 ZNF263 11 180.0 Weakly correlated
6 ZNF175 10 94.0 Weakly correlated
7 ZFP37 9 99.0 Weakly correlated
8 ZNF394 8 99.0 Weakly correlated
9 ZKSCAN1 7 160.0 Weakly correlated
10 ZNF558 7 99.0 Weakly correlated
11 ZNF324 7 99.0 Weakly correlated
12 ZNF2 7 99.0 Weakly correlated
13 ZNF317 7 99.0 Weakly correlated
14 ZNF101 6 43.0 Weakly correlated
15 ZKSCAN8 5 160.0 Weakly correlated
16 ZFP69B 5 99.0 Weakly correlated
17 ZNF701 4 28.9 Weakly correlated
18 ZNF197 4 99.0 Weakly correlated
19 ZIM3 4 87.0 Weakly correlated
20 ZNF680 3 28.9 Weakly correlated
21 ZNF92 3 28.9 Weakly correlated
22 ZNF778 3 74.0 Highly correlated
23 ZNF554 3 99.0 Weakly correlated
24 ZNF479 3 6.4 Weakly correlated
25 ZNF18 3 160.0 Weakly correlated
26 ZFP28 2 99.0 Weakly correlated
27 ZNF792 2 94.0 Weakly correlated
28 ZNF705B 1 28.9 Weakly correlated
29 ZNF528 1 43.0 Weakly correlated
30 ZNF808 1 19.6 Weakly correlated
31 ZNF441 1 43.0 Weakly correlated
32 ZNF182 1 99.0 Weakly correlated
33 ZNF347 1 43.0 Weakly correlated
34 ZNF735 1 28.9 Weakly correlated
35 ZNF716 1 19.6 Weakly correlated
36 ZNF707 1 74.0 Highly correlated
37 ZNF705D 1 28.9 Weakly correlated
38 ZNF304 1 99.0 Weakly correlated
39 ZNF251 1 94.0 Weakly correlated
40 ZNF695 1 28.9 Weakly correlated
41 ZNF274 1 99.0 Weakly correlated
42 ZNF679 1 28.9 Weakly correlated
43 ZNF677 1 99.0 Weakly correlated
44 ZNF610 1 28.9 Weakly correlated
45 ZNF607 1 43.0 Weakly correlated
46 ZNF597 1 94.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 4 43.0 Weakly correlated
2 ZFP37 3 99.0 Weakly correlated
3 ZNF263 3 180.0 Weakly correlated
4 ZNF589 3 28.9 Weakly correlated
5 ZNF175 2 94.0 Weakly correlated
6 ZNF382 2 99.0 Weakly correlated
7 ZNF584 2 99.0 Weakly correlated
8 ZNF701 2 28.9 Weakly correlated
9 ZNF197 2 99.0 Weakly correlated
10 ZNF101 2 43.0 Weakly correlated
11 ZNF554 1 99.0 Weakly correlated
12 ZNF479 1 6.4 Weakly correlated
13 ZNF677 1 99.0 Weakly correlated
14 ZNF680 1 28.9 Weakly correlated
15 ZNF792 1 94.0 Weakly correlated
16 ZNF695 1 28.9 Weakly correlated
17 ZIM3 1 87.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats