ZRdb KZFP & Repeats
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LTR_LTR43

  • Name
    LTR43
  • Repbase
    LTR43
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000521
Description :

Putative LTR from endogenous retrovirus distantly related to MLTV andHERV17.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgaggcaggataggtagtcaaggaagtgaccatgtcctcgggacgcggcaaccgtggtgaccgtacagtcaacacaataagcctcagcattcgcattgtagtcgagctcattcaagcaaagctatcttcagtagggaatttcccctgtagagagcatgcgcattttgattttacctgtcctcaaactgaccctttgctcattataatagtaaaaaacacancccctgggtggagatttaagatgctaatgagacatgcgacgtatgaacaagcatgtacagctactgcgcatgtgcacccagaggaccacccagaacatgcttactagtaacacctctttcccacctccttatgaataatcatgtaagactcccataaagggagtctccctagtgccagtctttgctgtctcatccttacgagcagcccgccctgaattctctctctcagggtgtactgtctattctgcacctaactttcaaaatattctttttcctttgcaataaattactctatgctgcatctcctttgctgtgtgtctcttgtttaaattcttttaaactaagaagacaagaaccgaggtntcacaacagccgtcaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 31 99.0 Weakly correlated
2 ZNF766 21 43.0 Weakly correlated
3 ZNF597 20 94.0 Weakly correlated
4 ZNF589 11 28.9 Weakly correlated
5 ZKSCAN8 11 160.0 Weakly correlated
6 ZFP69B 9 99.0 Weakly correlated
7 ZKSCAN1 8 160.0 Weakly correlated
8 ZNF679 8 28.9 Weakly correlated
9 ZNF324 8 99.0 Weakly correlated
10 ZNF101 7 43.0 Weakly correlated
11 ZNF584 7 99.0 Weakly correlated
12 ZNF394 7 99.0 Weakly correlated
13 ZNF2 7 99.0 Weakly correlated
14 ZNF197 6 99.0 Weakly correlated
15 ZFP37 5 99.0 Weakly correlated
16 ZNF175 5 94.0 Weakly correlated
17 ZNF558 4 99.0 Weakly correlated
18 ZNF490 4 43.0 Weakly correlated
19 ZNF317 4 99.0 Weakly correlated
20 ZNF610 3 28.9 Weakly correlated
21 ZNF274 3 99.0 Weakly correlated
22 ZNF251 3 94.0 Weakly correlated
23 ZNF792 3 94.0 Weakly correlated
24 ZNF723 2 15.2 Weakly correlated
25 ZNF264 2 99.0 Weakly correlated
26 ZNF84 2 99.0 Weakly correlated
27 ZFP57 2 87.0 Weakly correlated
28 ZNF705B 1 28.9 Weakly correlated
29 ZNF92 1 28.9 Weakly correlated
30 ZNF701 1 28.9 Weakly correlated
31 ZNF695 1 28.9 Weakly correlated
32 ZNF641 1 99.0 Weakly correlated
33 ZNF778 1 74.0 Highly correlated
34 ZNF585A 1 99.0 Weakly correlated
35 ZNF554 1 99.0 Weakly correlated
36 ZNF547 1 74.0 Highly correlated
37 ZNF528 1 43.0 Weakly correlated
38 ZNF479 1 6.4 Weakly correlated
39 ZNF441 1 43.0 Weakly correlated
40 ZNF334 1 99.0 Weakly correlated
41 ZNF273 1 28.9 Weakly correlated
42 ZNF257 1 0.0 Weakly correlated
43 ZNF230 1 28.9 Weakly correlated
44 ZNF18 1 160.0 Weakly correlated
45 ZKSCAN5 1 160.0 Weakly correlated
46 ZIM3 1 87.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF597 17 94.0 Weakly correlated
2 ZNF490 3 43.0 Weakly correlated
3 ZNF766 3 43.0 Weakly correlated
4 ZNF101 2 43.0 Weakly correlated
5 ZNF641 1 99.0 Weakly correlated
6 ZNF778 1 74.0 Highly correlated
7 ZNF84 1 99.0 Weakly correlated
8 ZNF584 1 99.0 Weakly correlated
9 ZNF264 1 99.0 Weakly correlated
10 ZNF589 1 28.9 Weakly correlated
11 ZNF723 1 15.2 Weakly correlated
12 ZFP37 1 99.0 Weakly correlated
13 ZNF197 1 99.0 Weakly correlated
14 ZKSCAN5 1 160.0 Weakly correlated
15 ZIM3 1 87.0 Weakly correlated
16 ZFP69B 1 99.0 Weakly correlated
17 ZFP57 1 87.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF597 94.0 Weakly correlated