ZRdb KZFP & Repeats
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LTR_LTR43-INT

  • Name
    LTR43-INT
  • Repbase
    LTR43_I
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000523
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tttctggtgccgtgacccagaggtttgtctgcttcattgatttcagtttcccttcacccgcggtgagtactatggcagtcccagactcctggttgactatcgctgcttntcccagcgctgttaaagttctgggggaggactttttaagtcacccgcattctttgngcgganaattgtgnccgctctccttttngctgctgcttctgcantatcgataattaccctanccgcatgggttgccctcaacattcannnttcggncttttgccgcttntgtttcacnttttgttttgccgtccctcccgggacnacacctgaccggcacttgntggccattgtaatnnnttgttcgctaatcgggtaatctcttcaaagntttttgtttactttgaggggcacattagntctantttngncaacagtccccgtccctccaggctctatgcgttctnagactcctntgcgtttcanagnnnnntgnnntnnncgnctcctntgaaattagaagacgttccaacaggctttctttgctgaacaaaagatgcacggtcacgcggatgcccagtcgtggggattgcatccgggcattccaggtgttataattgggcatcacaaatggcaaaccagtgaagtagggaaaggcttgtcagcgagacatctgggccccccagccggcagcgggggccacctcggtcgggcctggagatgtccagcgccggtgagacctaggacggtgcatggcaaacgcccgtgacctcctagggcctcggtttnatggggnttcaaggggacgccctggaccccgtggtccagcttggctcatggggacgcccacggcctcctggacttcggtatatgtttctgtcattgcaggattctctcggcaccacgggagccgcctcctctactntcactgaaacacccctgggatgtatattaaaaactggaacattttggagctanatgaattaaaaaataannnnnnnnnnnnntaaannnncgcgnnnnnnnatggccaaagaataaaactcttgataccatcctcaccactttaaggcttggggttttnttttccatcactgagtctctccctttcctctcattctttcacttacaaatctccagaacaattctcanccactgtgactttgctccctccggctgatttctcagttcatcctgacggnntnangggtgacaagcggaggtgaggacttcaaagtccacaccgagtagatctaggtcactgtggccctccctgacaggaggcttgtgagggtggcagggcttaagcccaggccgcgcaatgnctggggatcttcatttgcaatgtctgaagatcttcatttttcttactagtaacaaccatcctgttatgttcgcacttcnttgcatttcaccccttttgagtcctgtccttccatgaaaatttatcttgctttttggtccatctgtattcatagactttcatctgctttctttttatctctgacccataaggctgataaaaattgtcctaaaggtcctttctnnncgctgtgtgtgtcagggctcctctgccttcggccggggcggagttttgtctttaccagaagaaaactaattgctgggtaaaacacattttctgccanattccctttatggaacctaggaagcctaatgggtatggccacttacacctcctaagccgttattttaaggccaaaattaaaacattaangacacatataaggttggccattactaanntgaaaaaagagataaataaatctccatgattaggcctattcaacacagcatggccccaaacaatactgttttacaatcagaccttttcnnnnnnnnnnnnnnnnnnnataaaaagaaagaannnnnnnnggatgataagaaattccccaagggcccaggggaacctgacattattcctcccnctaaccaaacggctctatactaagacaagtctcttaaagaccaataccaaatatnttatgcccatgttattcaaaagagttcgggggaacntaacgtaattaatgactctatattangaaatnnnnncgncgngngcnnnnnnnncgcctcccaccaacagctttccttccttaaaatctagtccagggttactcctcaaacctctcgagcttctactcctgtggtccttcctcaccngacacacagtcttctgcaccccttccgtatcagctcgttcaccaaacactccctgaagagcccagtcccgctggaacaactcgnagcagggtatcctatcgcccacctaaaataaaaaacaaactacnctcactatctgtctgtacctctttcaggnaggtaacaaatagagaaacgaccaaatcctcntagagacttacttcattagtcagtctgccccagatattaggagaaagtcacaaaactagccatgggtccccaaaccccaataaatgaactactaaatgtagcttttggggtcttcaataaccgagacagagtgaaagaggcacanagaaatcaaagggaagaagagagagacaaaagacgggcccagttgttggccnncgctcgctacgggaaaactcccacctccaggtcatcctgggcggaacccaagggccattgccgcatttanagaaagccnggacactggagccaagtaagtaacaagggccttcaggcttgcaaaccccctggagcctatcatcaatgcggcaaagaagggcantggaagaaggactgtccccaactccgaagggaggagggactcctaattccttactgnccctggccaaagactgaagaggcccaaggcaaacgatggctcccatgcggcaatcagtcccaatcacagcaacggagccttggntgaccctggacgtggcaggtaaaaatattaatttcctnttaaacacaggggccggcctgtcagtcctcactttctgccctggacccctgtccgccaaacaccgcactgtcatcggtgttgatagcaaacnccgaactaggattttcactctaccccgcagctgaccaacttcgactgcagtaaaacntaggggtgtgggncttgggtgcacttatcaaaaataaaaaattattccttttnagtcgtcacagaaacccgnaacacagactccaagttattcctgtgaagcactggaggatctaaagctcctgtccaaaaacagccaanacccaaaacatcaaacaattaatattgcctcagcacaagcttctattcaagaaaacaactcgcagtgagacgtaatgtttttatttttctcttatttactcgctgcgcnctaggcactcttagaganacggntctgtctgctagagaaataatnaaccatactgttagtttattaaanttaactcaaccttgctggctttgcatgactaccaaaagttgggaatatgccagacctgtgccccgagaagactggnccggcatcccnacacacctccagggacaaactctggcccacagaatggggatatcnggccnaacagtcaatacaaagagattttnttgggtcnggtcatggccggttcaagcttccncttttaactatcaacaatagttccantctgccaaagggaaaantgctttcttaccttaccttttacccggagcaattccccttctgcctttacagcaatcatgccagttccactactttcgtagaaaaactccannagagagtcagtgtaaccgaacctttgtcactgggtcatctatacaccttntggtgggaccctaaaaggggaaccttatttnaaagaacttattaacaccacccaactctaccatccnctaatngacccagtgaccaccgaacttccgctgctttcaccactttaatgcaaaatacttttgcagcacaaatttcaccatcacaaggaatttnnnngtgtnggggtttgtggatcttcggcatatctacaactccctccactatggaagggacgatgctccatcgcttacatttccccttatctaactttcgcacgggctaacgcatctctccctttccccatgtaccaacatcgcaagatccacctccgagcaggaccccttattcccttaggtttagtactatcctctctgttgggattagcagggtcagccacggaggcggagccttgggaatccagcataaactgtctcagaaaaccgcagtggccctccaacaagcggcagagggcctcactagacttcaacaacggctggactccctggcagtcctacaaaaccaaagagccttagatcttctcacagccgggcaaggaggaacatgtttatatctaaaagaagaatgctgtttttacatcaatcagnntccaagaanatattaanannncgnnnccggaataanaanatcattacccaggcagacaaaattgaatctttaggaacttccatgggaacttggaagcaatggctattgtctgccttgctccctttaatagtgccagtcattaccatacttttagctttaacttttggtccaactttgtttaaaatgctgatttcttgctctctcgcttacggcaactccangtccgcatgatggttttgcaaggctttcaacctttggctgctaatgagctatctcacatcttgcccaccggtcccacgaacgacatggtttacaccccgttagatcaggcaggaagagactttagggcccaggctaggcagggacaacgccccactcagcaggaagcagctccagaagaaatgacctagcccctcaacctcccatatgattatgggccctaagatctcttagggggaaat
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 16 99.0 Weakly correlated
2 ZNF679 6 28.9 Weakly correlated
3 ZNF101 5 43.0 Weakly correlated
4 ZNF2 5 99.0 Weakly correlated
5 ZNF766 4 43.0 Weakly correlated
6 ZNF197 4 99.0 Weakly correlated
7 ZNF324 4 99.0 Weakly correlated
8 ZFP69B 3 99.0 Weakly correlated
9 ZIM3 3 87.0 Weakly correlated
10 ZNF394 3 99.0 Weakly correlated
11 ZNF610 3 28.9 Weakly correlated
12 ZNF263 3 180.0 Weakly correlated
13 ZNF479 2 6.4 Weakly correlated
14 ZNF792 2 94.0 Weakly correlated
15 ZNF485 2 94.0 Weakly correlated
16 ZNF589 2 28.9 Weakly correlated
17 ZNF597 2 94.0 Weakly correlated
18 ZNF641 2 99.0 Weakly correlated
19 ZFP37 2 99.0 Weakly correlated
20 ZNF425 2 94.0 Weakly correlated
21 ZNF257 2 0.0 Weakly correlated
22 ZNF18 2 160.0 Weakly correlated
23 ZKSCAN8 2 160.0 Weakly correlated
24 ZKSCAN1 2 160.0 Weakly correlated
25 ZFP57 2 87.0 Weakly correlated
26 ZNF26 1 99.0 Weakly correlated
27 ZNF558 1 99.0 Weakly correlated
28 ZNF570 1 99.0 Weakly correlated
29 ZNF222 1 43.0 Weakly correlated
30 ZNF627 1 74.0 Highly correlated
31 ZNF175 1 94.0 Weakly correlated
32 ZNF680 1 28.9 Weakly correlated
33 ZNF682 1 28.9 Weakly correlated
34 ZNF723 1 15.2 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 3 99.0 Weakly correlated
2 ZNF479 2 6.4 Weakly correlated
3 ZNF2 2 99.0 Weakly correlated
4 ZFP37 1 99.0 Weakly correlated
5 ZFP57 1 87.0 Weakly correlated
6 ZIM3 1 87.0 Weakly correlated
7 ZNF101 1 43.0 Weakly correlated
8 ZNF679 1 28.9 Weakly correlated
9 ZNF723 1 15.2 Weakly correlated
10 ZNF792 1 94.0 Weakly correlated
11 ZNF627 1 74.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats