ZRdb KZFP & Repeats
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LTR_LTR42

  • Name
    LTR42
  • Repbase
    LTR42
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000520
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtagggtcccccagttccccccgctttctttctgtgtcctgaccgaaaatcacagagtgccttgaccgctctgtgacccggccagctgcaggtttttcccngcaggcttgaacccaagccggggccttgaacattcccaggcactgataaaggtgtctaggttgttgcccaaaacactgaaagaaactggccccggccctgagccaaattccttaaaccctcatataaactccataccctgaccccctcgctgcggacatacctaggtagaacatcccttttctctcgctgtccgtcgcgaggattgctgcagcccactctgtacgtaagttcccctaataaatgctttggactgatcaccctggcgtttagtgcttctttctttggaatcccaaccggccccatctcgggacggtttggggcactcccttgtgggaactcccctgccgccgcttttggggcgactccagccgcgggttcggcgggacgaaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 15 99.0 Weakly correlated
2 ZIM3 10 87.0 Weakly correlated
3 ZNF766 8 43.0 Weakly correlated
4 ZNF18 5 160.0 Weakly correlated
5 ZNF589 5 28.9 Weakly correlated
6 ZNF534 5 19.6 Weakly correlated
7 ZKSCAN1 4 160.0 Weakly correlated
8 ZNF263 4 180.0 Weakly correlated
9 ZNF584 3 99.0 Weakly correlated
10 ZNF479 3 6.4 Weakly correlated
11 ZNF486 3 8.6 Weakly correlated
12 ZNF175 3 94.0 Weakly correlated
13 ZNF597 3 94.0 Weakly correlated
14 ZNF723 3 15.2 Weakly correlated
15 ZFP69B 2 99.0 Weakly correlated
16 ZNF680 2 28.9 Weakly correlated
17 ZNF701 2 28.9 Weakly correlated
18 ZNF483 2 99.0 Weakly correlated
19 ZNF394 2 99.0 Weakly correlated
20 ZNF793 2 99.0 Weakly correlated
21 ZFP57 2 87.0 Weakly correlated
22 ZNF197 2 99.0 Weakly correlated
23 ZNF317 2 99.0 Weakly correlated
24 ZNF124 1 43.0 Weakly correlated
25 ZNF91 1 6.0 Weakly correlated
26 ZNF799 1 43.0 Weakly correlated
27 ZFP69 1 99.0 Weakly correlated
28 ZNF75D 1 94.0 Weakly correlated
29 ZKSCAN8 1 160.0 Weakly correlated
30 ZNF705B 1 28.9 Weakly correlated
31 ZNF100 1 28.9 Weakly correlated
32 ZNF695 1 28.9 Weakly correlated
33 ZNF682 1 28.9 Weakly correlated
34 ZNF101 1 43.0 Weakly correlated
35 ZNF679 1 28.9 Weakly correlated
36 ZNF610 1 28.9 Weakly correlated
37 ZNF135 1 94.0 Weakly correlated
38 ZNF585B 1 99.0 Weakly correlated
39 ZNF140 1 99.0 Weakly correlated
40 ZNF558 1 99.0 Weakly correlated
41 ZNF17 1 69.0 Moderately correlated
42 ZNF490 1 43.0 Weakly correlated
43 ZNF485 1 94.0 Weakly correlated
44 ZNF264 1 99.0 Weakly correlated
45 ZNF28 1 28.9 Weakly correlated
46 ZNF44 1 43.0 Weakly correlated
47 ZNF41 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 4 87.0 Weakly correlated
2 ZNF597 3 94.0 Weakly correlated
3 ZNF483 2 99.0 Weakly correlated
4 ZNF534 2 19.6 Weakly correlated
5 ZFP57 1 87.0 Weakly correlated
6 ZNF101 1 43.0 Weakly correlated
7 ZNF140 1 99.0 Weakly correlated
8 ZNF263 1 180.0 Weakly correlated
9 ZNF479 1 6.4 Weakly correlated
10 ZNF585B 1 99.0 Weakly correlated
11 ZNF723 1 15.2 Weakly correlated
12 ZNF793 1 99.0 Weakly correlated
13 ZNF264 1 99.0 Weakly correlated
14 ZNF485 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats