ZRdb KZFP & Repeats
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LTR_LTR41C

  • Name
    LTR41C
  • Repbase
    LTR41C
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000519
Description :

Present in afrotheria.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgccagttatcaatttattgcctctcagctccaaatccacctttgccctgctttgtgatactggagctggaccctgtaaacatttctcctttgccagctggcacgatgttaagctttgtcagtagagggcgctggagggacactgcaggaggaaggggcttctttcctggttccggtgtgcttttttgctcctgtggcacatggctgccagcggcatgcgggacacccagtggcgctcaccctccagcgagtttcgccggcacccctgcgaagtcttgtnagctccccagngggtggcttcccagcgagtttcaccagcaccccagaggcctgcttcccagcgagtttcgccggcanccccagcgggcggtttccngccanccccggcctgcggcacctcagcgaacttctccgccatccagtgggccacaccntctccacanaggagtctgaatctcagccttggagagggcctccttccaagtttgttccttccttgggtactctncctcagccctagaggtagtggctgctccctatatctgctattcctgtattctttagagttctctttaccccttnttagttaatcctattattagttaattcttagttantataataattctttatattaaattttccctgttcaaattactgntgtggtttctgtctcctgactggaccctgactgataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 111 99.0 Highly correlated
2 ZNF263 66 180.0 Weakly correlated
3 ZNF2 64 99.0 Highly correlated
4 ZKSCAN1 58 160.0 Weakly correlated
5 ZFP37 55 99.0 Highly correlated
6 ZNF394 55 99.0 Highly correlated
7 ZNF766 51 43.0 Weakly correlated
8 ZNF559 48 74.0 Weakly correlated
9 ZNF573 38 94.0 Moderately correlated
10 ZNF324 36 99.0 Highly correlated
11 ZNF18 31 160.0 Weakly correlated
12 ZNF197 28 99.0 Highly correlated
13 ZNF589 26 28.9 Weakly correlated
14 ZFP69B 26 99.0 Highly correlated
15 ZNF528 25 43.0 Weakly correlated
16 ZNF101 24 43.0 Weakly correlated
17 ZNF610 23 28.9 Weakly correlated
18 ZNF554 21 99.0 Highly correlated
19 ZNF584 19 99.0 Highly correlated
20 ZNF558 19 99.0 Highly correlated
21 ZNF723 18 15.2 Weakly correlated
22 ZNF175 16 94.0 Moderately correlated
23 ZNF701 16 28.9 Weakly correlated
24 ZKSCAN8 16 160.0 Weakly correlated
25 ZNF792 11 94.0 Moderately correlated
26 ZNF597 10 94.0 Moderately correlated
27 ZNF75D 10 94.0 Moderately correlated
28 ZNF680 9 28.9 Weakly correlated
29 ZNF705B 9 28.9 Weakly correlated
30 ZNF479 8 6.4 Weakly correlated
31 ZNF264 8 99.0 Highly correlated
32 ZNF317 7 99.0 Highly correlated
33 ZNF140 6 99.0 Highly correlated
34 ZNF682 6 28.9 Weakly correlated
35 ZNF695 6 28.9 Weakly correlated
36 ZNF684 5 99.0 Highly correlated
37 ZNF707 5 74.0 Weakly correlated
38 ZNF534 5 19.6 Weakly correlated
39 ZNF547 5 74.0 Weakly correlated
40 ZNF251 4 94.0 Moderately correlated
41 ZNF257 4 0.0 Weakly correlated
42 ZNF485 4 94.0 Moderately correlated
43 ZNF189 4 99.0 Highly correlated
44 ZNF519 4 19.6 Weakly correlated
45 ZNF671 3 94.0 Moderately correlated
46 ZNF563 3 28.9 Weakly correlated
47 ZNF679 3 28.9 Weakly correlated
48 ZNF75A 3 94.0 Moderately correlated
49 ZNF549 3 87.0 Moderately correlated
50 ZNF8 3 99.0 Highly correlated
51 ZNF705D 3 28.9 Weakly correlated
52 ZNF273 3 28.9 Weakly correlated
53 ZNF274 3 99.0 Highly correlated
54 ZNF780B 2 74.0 Weakly correlated
55 ZFP57 2 87.0 Moderately correlated
56 ZNF641 2 99.0 Highly correlated
57 ZNF778 2 74.0 Weakly correlated
58 ZNF735 2 28.9 Weakly correlated
59 ZNF674 2 99.0 Highly correlated
60 ZNF677 2 99.0 Highly correlated
61 ZNF561 2 43.0 Weakly correlated
62 ZNF510 2 99.0 Highly correlated
63 ZNF490 2 43.0 Weakly correlated
64 ZNF486 2 8.6 Weakly correlated
65 ZNF468 2 28.9 Weakly correlated
66 ZNF441 2 43.0 Weakly correlated
67 ZNF230 2 28.9 Weakly correlated
68 ZNF282 2 319.0 Weakly correlated
69 ZNF133 2 99.0 Highly correlated
70 ZNF878 1 43.0 Weakly correlated
71 ZNF202 1 160.0 Weakly correlated
72 ZNF141 1 43.0 Weakly correlated
73 ZNF786 1 99.0 Highly correlated
74 ZNF114 1 28.9 Weakly correlated
75 ZNF793 1 99.0 Highly correlated
76 ZNF81 1 99.0 Highly correlated
77 ZNF93 1 8.6 Weakly correlated
78 ZKSCAN5 1 160.0 Weakly correlated
79 ZNF585B 1 99.0 Highly correlated
80 ZNF222 1 43.0 Weakly correlated
81 ZNF224 1 69.0 Weakly correlated
82 ZNF747 1 43.0 Weakly correlated
83 ZNF716 1 19.6 Weakly correlated
84 ZNF284 1 43.0 Weakly correlated
85 ZNF33A 1 99.0 Highly correlated
86 ZNF37A 1 99.0 Highly correlated
87 ZNF420 1 94.0 Moderately correlated
88 ZNF430 1 19.6 Weakly correlated
89 ZNF506 1 28.9 Weakly correlated
90 ZNF585A 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF573 36 94.0 Moderately correlated
2 ZNF2 24 99.0 Highly correlated
3 ZNF723 16 15.2 Weakly correlated
4 ZNF382 5 99.0 Highly correlated
5 ZNF680 5 28.9 Weakly correlated
6 ZNF263 5 180.0 Weakly correlated
7 ZNF528 5 43.0 Weakly correlated
8 ZNF75D 5 94.0 Moderately correlated
9 ZNF684 4 99.0 Highly correlated
10 ZNF766 4 43.0 Weakly correlated
11 ZNF534 3 19.6 Weakly correlated
12 ZKSCAN1 3 160.0 Weakly correlated
13 ZNF561 2 43.0 Weakly correlated
14 ZNF75A 2 94.0 Moderately correlated
15 ZNF695 2 28.9 Weakly correlated
16 ZNF792 2 94.0 Moderately correlated
17 ZNF597 2 94.0 Moderately correlated
18 ZNF677 2 99.0 Highly correlated
19 ZNF273 2 28.9 Weakly correlated
20 ZNF133 2 99.0 Highly correlated
21 ZFP69B 2 99.0 Highly correlated
22 ZNF257 2 0.0 Weakly correlated
23 ZNF468 1 28.9 Weakly correlated
24 ZFP37 1 99.0 Highly correlated
25 ZNF701 1 28.9 Weakly correlated
26 ZNF780B 1 74.0 Weakly correlated
27 ZNF197 1 99.0 Highly correlated
28 ZNF101 1 43.0 Weakly correlated
29 ZNF549 1 87.0 Moderately correlated
30 ZNF585B 1 99.0 Highly correlated
31 ZNF793 1 99.0 Highly correlated
32 ZNF189 1 99.0 Highly correlated
33 ZNF485 1 94.0 Moderately correlated
34 ZNF506 1 28.9 Weakly correlated
35 ZNF554 1 99.0 Highly correlated
36 ZNF589 1 28.9 Weakly correlated
37 ZNF175 1 94.0 Moderately correlated
38 ZNF707 1 74.0 Weakly correlated
39 ZNF18 1 160.0 Weakly correlated
40 ZNF671 1 94.0 Moderately correlated
41 ZNF585A 1 99.0 Highly correlated
42 ZNF324 1 99.0 Highly correlated
43 ZNF420 1 94.0 Moderately correlated
44 ZNF282 1 319.0 Weakly correlated
45 ZNF584 1 99.0 Highly correlated
46 ZNF490 1 43.0 Weakly correlated
47 ZNF274 1 99.0 Highly correlated
48 ZNF264 1 99.0 Highly correlated
49 ZKSCAN8 1 160.0 Weakly correlated
50 ZNF610 1 28.9 Weakly correlated
51 ZNF674 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF2 99.0 Highly correlated
2 ZNF573 94.0 Moderately correlated