ZRdb KZFP & Repeats
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LTR_LTR41B

  • Name
    LTR41B
  • Repbase
    LTR41B
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000518
Description :

5 bp TSDs.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgccagttatcaatttattgcctctcagctccaaattcacccttcaatacctgctctgcgataatggactggactctttaagcatttctcctttacagtgagcacgatgttaagctttntcagtagagggcgctggagggacattgcaggaggaagggggcttctcttcctggttccggtgtgctgcgttttgctttttcttgctcctgctgcacggtcggtcagcggtgcgggtgtgtggggacatccggtggtgctctgccccagccgcgcgcccagagcgcgcagtccctcggcgacctcgcagccccggcctgggcccggtgaccaccttcccgcggccctcccgacgcggacaccgcgtgctccaggcctcgcgcccgcagcggcgccccgactccctctgcgcgcccgcccaccagcctcggctcgcctgcaccccggagggttgcttcctgcttgcccagcgactgcggaccagctctggcccgggcaanccagcgaacttctctgccatccagtgggctgcaaccacaccttctccaacgaggtctgaaccccagccttggggagggggccccccttccaagtttgtccttccttgggtactctccctcagccctagggtaccctttagagttctctttacatcttatagttactctcctatcatagcttaataattctttatattaaacttcccctgtttaaattactgtgtggtttctgtctcctgattggacccagactgataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 145 99.0 Highly correlated
2 ZNF263 94 180.0 Weakly correlated
3 ZNF766 75 43.0 Weakly correlated
4 ZNF2 71 99.0 Highly correlated
5 ZKSCAN1 47 160.0 Weakly correlated
6 ZNF18 47 160.0 Weakly correlated
7 ZFP37 42 99.0 Highly correlated
8 ZNF573 41 94.0 Moderately correlated
9 ZNF394 34 99.0 Highly correlated
10 ZNF680 30 28.9 Weakly correlated
11 ZFP69B 27 99.0 Highly correlated
12 ZNF589 27 28.9 Weakly correlated
13 ZNF324 26 99.0 Highly correlated
14 ZNF723 26 15.2 Weakly correlated
15 ZNF197 23 99.0 Highly correlated
16 ZNF175 22 94.0 Moderately correlated
17 ZNF584 20 99.0 Highly correlated
18 ZNF101 16 43.0 Weakly correlated
19 ZNF610 16 28.9 Weakly correlated
20 ZNF701 15 28.9 Weakly correlated
21 ZKSCAN8 14 160.0 Weakly correlated
22 ZNF558 13 99.0 Highly correlated
23 ZIM3 12 87.0 Moderately correlated
24 ZNF528 12 43.0 Weakly correlated
25 ZNF317 10 99.0 Highly correlated
26 ZNF679 10 28.9 Weakly correlated
27 ZNF479 9 6.4 Weakly correlated
28 ZNF534 9 19.6 Weakly correlated
29 ZNF554 9 99.0 Highly correlated
30 ZNF695 9 28.9 Weakly correlated
31 ZNF549 8 87.0 Moderately correlated
32 ZNF641 8 99.0 Highly correlated
33 ZNF792 8 94.0 Moderately correlated
34 ZNF274 7 99.0 Highly correlated
35 ZNF425 7 94.0 Moderately correlated
36 ZNF547 7 74.0 Weakly correlated
37 ZNF682 7 28.9 Weakly correlated
38 ZNF793 7 99.0 Highly correlated
39 ZNF202 6 160.0 Weakly correlated
40 ZNF257 6 0.0 Weakly correlated
41 ZNF585B 6 99.0 Highly correlated
42 ZNF8 6 99.0 Highly correlated
43 ZFP57 5 87.0 Moderately correlated
44 ZNF519 5 19.6 Weakly correlated
45 ZNF559 5 74.0 Weakly correlated
46 ZNF735 5 28.9 Weakly correlated
47 ZNF133 4 99.0 Highly correlated
48 ZNF230 4 28.9 Weakly correlated
49 ZNF251 4 94.0 Moderately correlated
50 ZNF264 4 99.0 Highly correlated
51 ZNF273 4 28.9 Weakly correlated
52 ZNF282 4 319.0 Weakly correlated
53 ZNF30 4 94.0 Moderately correlated
54 ZNF705B 4 28.9 Weakly correlated
55 ZNF140 3 99.0 Highly correlated
56 ZNF28 3 28.9 Weakly correlated
57 ZNF440 3 28.9 Weakly correlated
58 ZNF441 3 43.0 Weakly correlated
59 ZNF483 3 99.0 Highly correlated
60 ZNF485 3 94.0 Moderately correlated
61 ZNF560 3 43.0 Weakly correlated
62 ZNF597 3 94.0 Moderately correlated
63 ZNF611 3 19.6 Weakly correlated
64 ZNF705D 3 28.9 Weakly correlated
65 ZNF707 3 74.0 Weakly correlated
66 ZNF75A 3 94.0 Moderately correlated
67 ZNF778 3 74.0 Weakly correlated
68 ZNF124 2 43.0 Weakly correlated
69 ZNF141 2 43.0 Weakly correlated
70 ZNF189 2 99.0 Highly correlated
71 ZNF320 2 28.9 Weakly correlated
72 ZNF418 2 43.0 Weakly correlated
73 ZNF506 2 28.9 Weakly correlated
74 ZNF563 2 28.9 Weakly correlated
75 ZNF582 2 99.0 Highly correlated
76 ZNF699 2 99.0 Highly correlated
77 ZNF727 2 19.6 Weakly correlated
78 ZNF786 2 99.0 Highly correlated
79 ZFP30 1 99.0 Highly correlated
80 ZKSCAN5 1 160.0 Weakly correlated
81 ZNF114 1 28.9 Weakly correlated
82 ZNF181 1 94.0 Moderately correlated
83 ZNF222 1 43.0 Weakly correlated
84 ZNF224 1 69.0 Weakly correlated
85 ZNF250 1 99.0 Highly correlated
86 ZNF284 1 43.0 Weakly correlated
87 ZNF331 1 94.0 Moderately correlated
88 ZNF333 1 99.0 Highly correlated
89 ZNF337 1 43.0 Weakly correlated
90 ZNF343 1 74.0 Weakly correlated
91 ZNF354A 1 99.0 Highly correlated
92 ZNF354C 1 99.0 Highly correlated
93 ZNF420 1 94.0 Moderately correlated
94 ZNF429 1 28.9 Weakly correlated
95 ZNF431 1 28.9 Weakly correlated
96 ZNF44 1 43.0 Weakly correlated
97 ZNF471 1 94.0 Moderately correlated
98 ZNF486 1 8.6 Weakly correlated
99 ZNF490 1 43.0 Weakly correlated
100 ZNF510 1 99.0 Highly correlated
101 ZNF543 1 99.0 Highly correlated
102 ZNF567 1 99.0 Highly correlated
103 ZNF568 1 99.0 Highly correlated
104 ZNF585A 1 99.0 Highly correlated
105 ZNF627 1 74.0 Weakly correlated
106 ZNF669 1 43.0 Weakly correlated
107 ZNF675 1 8.6 Weakly correlated
108 ZNF677 1 99.0 Highly correlated
109 ZNF773 1 94.0 Moderately correlated
110 ZNF780A 1 43.0 Weakly correlated
111 ZNF808 1 19.6 Weakly correlated
112 ZNF823 1 43.0 Weakly correlated
113 ZNF846 1 74.0 Weakly correlated
114 ZNF92 1 28.9 Weakly correlated
115 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF2 34 99.0 Highly correlated
2 ZNF573 33 94.0 Moderately correlated
3 ZNF723 18 15.2 Weakly correlated
4 ZNF680 9 28.9 Weakly correlated
5 ZNF479 6 6.4 Weakly correlated
6 ZNF766 5 43.0 Weakly correlated
7 ZNF534 5 19.6 Weakly correlated
8 ZNF382 5 99.0 Highly correlated
9 ZNF263 4 180.0 Weakly correlated
10 ZIM3 4 87.0 Moderately correlated
11 ZNF282 3 319.0 Weakly correlated
12 ZNF317 3 99.0 Highly correlated
13 ZNF101 3 43.0 Weakly correlated
14 ZNF549 3 87.0 Moderately correlated
15 ZNF793 2 99.0 Highly correlated
16 ZNF197 2 99.0 Highly correlated
17 ZNF440 2 28.9 Weakly correlated
18 ZNF485 2 94.0 Moderately correlated
19 ZNF420 1 94.0 Moderately correlated
20 ZNF18 1 160.0 Weakly correlated
21 ZNF230 1 28.9 Weakly correlated
22 ZNF320 1 28.9 Weakly correlated
23 ZNF675 1 8.6 Weakly correlated
24 ZNF679 1 28.9 Weakly correlated
25 ZNF780A 1 43.0 Weakly correlated
26 ZNF175 1 94.0 Moderately correlated
27 ZNF585A 1 99.0 Highly correlated
28 ZNF554 1 99.0 Highly correlated
29 ZNF677 1 99.0 Highly correlated
30 ZNF792 1 94.0 Moderately correlated
31 ZNF273 1 28.9 Weakly correlated
32 ZNF695 1 28.9 Weakly correlated
33 ZNF610 1 28.9 Weakly correlated
34 ZFP69B 1 99.0 Highly correlated
35 ZKSCAN1 1 160.0 Weakly correlated
36 ZNF133 1 99.0 Highly correlated
37 ZNF141 1 43.0 Weakly correlated
38 ZNF641 1 99.0 Highly correlated
39 ZKSCAN8 1 160.0 Weakly correlated
40 ZNF202 1 160.0 Weakly correlated
41 ZNF257 1 0.0 Weakly correlated
42 ZNF589 1 28.9 Weakly correlated
43 ZNF584 1 99.0 Highly correlated
44 ZNF189 1 99.0 Highly correlated
45 ZNF519 1 19.6 Weakly correlated
46 ZNF558 1 99.0 Highly correlated
47 ZNF559 1 74.0 Weakly correlated
48 ZFP37 1 99.0 Highly correlated
49 ZNF701 1 28.9 Weakly correlated
50 ZNF735 1 28.9 Weakly correlated
51 ZNF324 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF2 99.0 Highly correlated
2 ZNF573 94.0 Moderately correlated