ZRdb KZFP & Repeats
...

LTR_LTR41

  • Name
    LTR41
  • Repbase
    LTR41
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000517
Description :

Many subfamilies.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgccagttatcaatttattgcctctcagctccaaattcacccttcnttgcctgctctgtgaaaatgganctgggccctttaaatatttttcctttgccagctggcacgatgttaagctttgtcagtagagggcgctggagagacactgcaggaggaaggggttttncttcctggttccggtgtgcttctctcacttggcaggctcctgcagccaggcacggcttctccagcgcccggctcctgcagcgcgcgcagcttctccagcgcccggctcctgcagcatggcacttctcagcatgcagctccgcagcagcagtgccagcagcttcccccggcaccctcctcgggcggttttgtagcggagtgcctccggtgagacacctccccgtgaacagctttccccggcaccctagagggcggatttccggcaagttccagagggcggatttccagcaagttccgccggcgcggcaccacagcgacttctctgccatccagtgagccacggccgtgccctctccaacaaggtctggatctcagccctggggggagggggctcttccttgggcgctctatctcagccctaggggtagtggctgctccttatatctgctattcctatattctttagagttctctttacttcttactagccaatccctcgttactccaatcccctgttatagttaataattctttatattaaactttccctgttcaaattactgtgtggtttctntctcctgattggacccngactgataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 173 99.0 Highly correlated
2 ZNF766 91 43.0 Weakly correlated
3 ZNF263 82 180.0 Weakly correlated
4 ZNF394 74 99.0 Highly correlated
5 ZKSCAN1 68 160.0 Weakly correlated
6 ZNF2 65 99.0 Highly correlated
7 ZNF573 56 94.0 Moderately correlated
8 ZFP37 50 99.0 Highly correlated
9 ZNF18 45 160.0 Weakly correlated
10 ZNF723 32 15.2 Weakly correlated
11 ZIM3 26 87.0 Moderately correlated
12 ZNF680 26 28.9 Weakly correlated
13 ZNF701 25 28.9 Weakly correlated
14 ZNF197 24 99.0 Highly correlated
15 ZNF324 20 99.0 Highly correlated
16 ZNF230 19 28.9 Weakly correlated
17 ZFP69B 18 99.0 Highly correlated
18 ZNF554 17 99.0 Highly correlated
19 ZNF175 16 94.0 Moderately correlated
20 ZNF101 15 43.0 Weakly correlated
21 ZNF317 15 99.0 Highly correlated
22 ZNF558 15 99.0 Highly correlated
23 ZNF589 14 28.9 Weakly correlated
24 ZKSCAN8 13 160.0 Weakly correlated
25 ZNF479 13 6.4 Weakly correlated
26 ZNF597 13 94.0 Moderately correlated
27 ZNF528 12 43.0 Weakly correlated
28 ZNF534 11 19.6 Weakly correlated
29 ZNF610 11 28.9 Weakly correlated
30 ZNF699 11 99.0 Highly correlated
31 ZNF792 11 94.0 Moderately correlated
32 ZNF679 10 28.9 Weakly correlated
33 ZNF584 9 99.0 Highly correlated
34 ZNF793 9 99.0 Highly correlated
35 ZFP57 8 87.0 Moderately correlated
36 ZNF682 8 28.9 Weakly correlated
37 ZNF257 7 0.0 Weakly correlated
38 ZNF547 7 74.0 Weakly correlated
39 ZNF140 6 99.0 Highly correlated
40 ZNF273 6 28.9 Weakly correlated
41 ZNF490 6 43.0 Weakly correlated
42 ZNF506 6 28.9 Weakly correlated
43 ZNF747 6 43.0 Weakly correlated
44 ZNF189 5 99.0 Highly correlated
45 ZNF222 5 43.0 Weakly correlated
46 ZNF251 5 94.0 Moderately correlated
47 ZNF343 5 74.0 Weakly correlated
48 ZNF425 5 94.0 Moderately correlated
49 ZNF519 5 19.6 Weakly correlated
50 ZNF549 5 87.0 Moderately correlated
51 ZNF641 5 99.0 Highly correlated
52 ZNF705B 5 28.9 Weakly correlated
53 ZNF707 5 74.0 Weakly correlated
54 ZNF75D 5 94.0 Moderately correlated
55 ZNF274 4 99.0 Highly correlated
56 ZNF28 4 28.9 Weakly correlated
57 ZNF320 4 28.9 Weakly correlated
58 ZNF331 4 94.0 Moderately correlated
59 ZNF563 4 28.9 Weakly correlated
60 ZNF674 4 99.0 Highly correlated
61 ZNF684 4 99.0 Highly correlated
62 ZNF695 4 28.9 Weakly correlated
63 ZNF133 3 99.0 Highly correlated
64 ZNF264 3 99.0 Highly correlated
65 ZNF560 3 43.0 Weakly correlated
66 ZNF705D 3 28.9 Weakly correlated
67 ZNF735 3 28.9 Weakly correlated
68 ZNF878 3 43.0 Weakly correlated
69 ZNF100 2 28.9 Weakly correlated
70 ZNF124 2 43.0 Weakly correlated
71 ZNF26 2 99.0 Highly correlated
72 ZNF334 2 99.0 Highly correlated
73 ZNF468 2 28.9 Weakly correlated
74 ZNF483 2 99.0 Highly correlated
75 ZNF485 2 94.0 Moderately correlated
76 ZNF510 2 99.0 Highly correlated
77 ZNF557 2 15.2 Weakly correlated
78 ZNF585B 2 99.0 Highly correlated
79 ZNF671 2 94.0 Moderately correlated
80 ZNF700 2 28.9 Weakly correlated
81 ZNF765 2 8.6 Weakly correlated
82 ZNF84 2 99.0 Highly correlated
83 ZNF92 2 28.9 Weakly correlated
84 ZNF93 2 8.6 Weakly correlated
85 ZFP30 1 99.0 Highly correlated
86 ZKSCAN2 1 180.0 Weakly correlated
87 ZNF141 1 43.0 Weakly correlated
88 ZNF157 1 99.0 Highly correlated
89 ZNF160 1 74.0 Weakly correlated
90 ZNF182 1 99.0 Highly correlated
91 ZNF202 1 160.0 Weakly correlated
92 ZNF283 1 99.0 Highly correlated
93 ZNF287 1 99.0 Highly correlated
94 ZNF30 1 94.0 Moderately correlated
95 ZNF333 1 99.0 Highly correlated
96 ZNF34 1 99.0 Highly correlated
97 ZNF354A 1 99.0 Highly correlated
98 ZNF41 1 99.0 Highly correlated
99 ZNF43 1 43.0 Weakly correlated
100 ZNF440 1 28.9 Weakly correlated
101 ZNF441 1 43.0 Weakly correlated
102 ZNF454 1 99.0 Highly correlated
103 ZNF486 1 8.6 Weakly correlated
104 ZNF548 1 94.0 Moderately correlated
105 ZNF559 1 74.0 Weakly correlated
106 ZNF561 1 43.0 Weakly correlated
107 ZNF571 1 99.0 Highly correlated
108 ZNF585A 1 99.0 Highly correlated
109 ZNF605 1 99.0 Highly correlated
110 ZNF675 1 8.6 Weakly correlated
111 ZNF716 1 19.6 Weakly correlated
112 ZNF75A 1 94.0 Moderately correlated
113 ZNF778 1 74.0 Weakly correlated
114 ZNF780B 1 74.0 Weakly correlated
115 ZNF786 1 99.0 Highly correlated
116 ZNF789 1 99.0 Highly correlated
117 ZNF790 1 99.0 Highly correlated
118 ZNF799 1 43.0 Weakly correlated
119 ZNF808 1 19.6 Weakly correlated
120 ZNF823 1 43.0 Weakly correlated
121 ZNF845 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF573 48 94.0 Moderately correlated
2 ZNF2 33 99.0 Highly correlated
3 ZNF723 26 15.2 Weakly correlated
4 ZIM3 13 87.0 Moderately correlated
5 ZNF680 9 28.9 Weakly correlated
6 ZNF263 8 180.0 Weakly correlated
7 ZNF597 8 94.0 Moderately correlated
8 ZNF18 7 160.0 Weakly correlated
9 ZKSCAN1 6 160.0 Weakly correlated
10 ZNF766 5 43.0 Weakly correlated
11 ZNF534 5 19.6 Weakly correlated
12 ZNF257 5 0.0 Weakly correlated
13 ZNF674 4 99.0 Highly correlated
14 ZNF684 4 99.0 Highly correlated
15 ZNF479 4 6.4 Weakly correlated
16 ZNF528 3 43.0 Weakly correlated
17 ZNF343 3 74.0 Weakly correlated
18 ZNF490 3 43.0 Weakly correlated
19 ZNF468 2 28.9 Weakly correlated
20 ZNF75D 2 94.0 Moderately correlated
21 ZNF735 2 28.9 Weakly correlated
22 ZNF485 2 94.0 Moderately correlated
23 ZNF679 2 28.9 Weakly correlated
24 ZNF382 2 99.0 Highly correlated
25 ZNF701 2 28.9 Weakly correlated
26 ZNF793 2 99.0 Highly correlated
27 ZFP57 2 87.0 Moderately correlated
28 ZNF101 2 43.0 Weakly correlated
29 ZNF549 2 87.0 Moderately correlated
30 ZNF140 2 99.0 Highly correlated
31 ZNF506 2 28.9 Weakly correlated
32 ZNF317 2 99.0 Highly correlated
33 ZFP37 1 99.0 Highly correlated
34 ZNF780B 1 74.0 Weakly correlated
35 ZNF671 1 94.0 Moderately correlated
36 ZKSCAN8 1 160.0 Weakly correlated
37 ZNF28 1 28.9 Weakly correlated
38 ZNF100 1 28.9 Weakly correlated
39 ZNF585A 1 99.0 Highly correlated
40 ZNF792 1 94.0 Moderately correlated
41 ZNF133 1 99.0 Highly correlated
42 ZNF141 1 43.0 Weakly correlated
43 ZNF483 1 99.0 Highly correlated
44 ZNF34 1 99.0 Highly correlated
45 ZNF320 1 28.9 Weakly correlated
46 ZNF283 1 99.0 Highly correlated
47 ZNF695 1 28.9 Weakly correlated
48 ZNF554 1 99.0 Highly correlated
49 ZNF563 1 28.9 Weakly correlated
50 ZNF716 1 19.6 Weakly correlated
51 ZNF189 1 99.0 Highly correlated
52 ZNF331 1 94.0 Moderately correlated
53 ZNF75A 1 94.0 Moderately correlated
54 ZNF560 1 43.0 Weakly correlated
55 ZNF287 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZKSCAN1 160.0 Weakly correlated
2 ZNF2 99.0 Highly correlated
3 ZNF573 94.0 Moderately correlated
4 ZNF597 94.0 Moderately correlated