ZRdb KZFP & Repeats
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LTR_LTR40C

  • Name
    LTR40C
  • Repbase
    LTR40C
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000516
Description :

5 bp TSDs.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttgggagacaatcctccatgggcccctngcgctcctgcacgtcttgctgggtatgccaagaatgcaaggccctgaccgctctttacctcgggccatttctcagggttgtgtttgcagcgagcaaccttgagggatgaggtaatgtctccctccgggacaaagagcaggcttgcttactgcttgctataaaagcggtggattccccaagctcagtgttcctcngctgtaacgcaaacccactgcgtgcgcagcatccatctgggccctccgcgtcgcccccgtgggacttggggggncanggggaaccgacgcaaacatgctgatgctcatgctgcttgctgtgccgtgagtaataaagtcctttgtctctgacccaggagtctcgtgtcttctgccagcatccatgaaacagtaacaggctaacttattagcttgtaagtagggtaaaatcccagacctgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 67 99.0 Highly correlated
2 ZIM3 15 87.0 Moderately correlated
3 ZNF680 13 28.9 Weakly correlated
4 ZNF263 12 180.0 Weakly correlated
5 ZNF479 11 6.4 Weakly correlated
6 ZNF394 11 99.0 Highly correlated
7 ZNF679 10 28.9 Weakly correlated
8 ZNF554 9 99.0 Highly correlated
9 ZKSCAN1 8 160.0 Weakly correlated
10 ZNF766 8 43.0 Weakly correlated
11 ZNF317 7 99.0 Highly correlated
12 ZNF558 7 99.0 Highly correlated
13 ZFP37 7 99.0 Highly correlated
14 ZNF175 5 94.0 Moderately correlated
15 ZNF584 5 99.0 Highly correlated
16 ZNF75D 5 94.0 Moderately correlated
17 ZFP69B 5 99.0 Highly correlated
18 ZNF613 5 99.0 Highly correlated
19 ZNF589 4 28.9 Weakly correlated
20 ZNF320 4 28.9 Weakly correlated
21 ZNF92 4 28.9 Weakly correlated
22 ZNF610 4 28.9 Weakly correlated
23 ZNF18 4 160.0 Weakly correlated
24 ZNF723 4 15.2 Weakly correlated
25 ZNF101 4 43.0 Weakly correlated
26 ZNF792 4 94.0 Moderately correlated
27 ZNF597 3 94.0 Moderately correlated
28 ZNF2 3 99.0 Highly correlated
29 ZNF695 3 28.9 Weakly correlated
30 ZNF324 3 99.0 Highly correlated
31 ZNF140 3 99.0 Highly correlated
32 ZNF705D 2 28.9 Weakly correlated
33 ZNF573 2 94.0 Moderately correlated
34 ZNF486 2 8.6 Weakly correlated
35 ZNF528 2 43.0 Weakly correlated
36 ZNF251 2 94.0 Moderately correlated
37 ZNF257 2 0.0 Weakly correlated
38 ZKSCAN8 2 160.0 Weakly correlated
39 ZNF141 2 43.0 Weakly correlated
40 ZNF136 1 74.0 Weakly correlated
41 ZNF701 1 28.9 Weakly correlated
42 ZNF705B 1 28.9 Weakly correlated
43 ZNF197 1 99.0 Highly correlated
44 ZNF707 1 74.0 Weakly correlated
45 ZNF716 1 19.6 Weakly correlated
46 ZFP28 1 99.0 Highly correlated
47 ZNF778 1 74.0 Weakly correlated
48 ZNF786 1 99.0 Highly correlated
49 ZFP69 1 99.0 Highly correlated
50 ZNF793 1 99.0 Highly correlated
51 ZNF8 1 99.0 Highly correlated
52 ZNF519 1 19.6 Weakly correlated
53 ZNF202 1 160.0 Weakly correlated
54 ZNF641 1 99.0 Highly correlated
55 ZNF273 1 28.9 Weakly correlated
56 ZNF274 1 99.0 Highly correlated
57 ZNF28 1 28.9 Weakly correlated
58 ZNF41 1 99.0 Highly correlated
59 ZNF585A 1 99.0 Highly correlated
60 ZNF441 1 43.0 Weakly correlated
61 ZNF460 1 74.0 Weakly correlated
62 ZNF485 1 94.0 Moderately correlated
63 ZFP14 1 99.0 Highly correlated
64 ZNF549 1 87.0 Moderately correlated
65 ZNF534 1 19.6 Weakly correlated
66 ZNF490 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 8 87.0 Moderately correlated
2 ZNF479 7 6.4 Weakly correlated
3 ZNF263 4 180.0 Weakly correlated
4 ZNF680 4 28.9 Weakly correlated
5 ZKSCAN1 3 160.0 Weakly correlated
6 ZNF792 2 94.0 Moderately correlated
7 ZNF554 2 99.0 Highly correlated
8 ZNF679 2 28.9 Weakly correlated
9 ZNF175 1 94.0 Moderately correlated
10 ZNF2 1 99.0 Highly correlated
11 ZNF558 1 99.0 Highly correlated
12 ZNF317 1 99.0 Highly correlated
13 ZNF382 1 99.0 Highly correlated
14 ZNF597 1 94.0 Moderately correlated
15 ZNF695 1 28.9 Weakly correlated
16 ZNF701 1 28.9 Weakly correlated
17 ZNF723 1 15.2 Weakly correlated
18 ZNF793 1 99.0 Highly correlated
19 ZNF92 1 28.9 Weakly correlated
20 ZNF589 1 28.9 Weakly correlated
21 ZNF534 1 19.6 Weakly correlated
22 ZFP14 1 99.0 Highly correlated
23 ZNF202 1 160.0 Weakly correlated
24 ZNF584 1 99.0 Highly correlated
25 ZNF573 1 94.0 Moderately correlated
26 ZNF257 1 0.0 Weakly correlated
27 ZNF75D 1 94.0 Moderately correlated
28 ZNF766 1 43.0 Weakly correlated
29 ZNF320 1 28.9 Weakly correlated
30 ZNF141 1 43.0 Weakly correlated
31 ZNF136 1 74.0 Weakly correlated
32 ZFP37 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats