ZRdb KZFP & Repeats
...

LTR_LTR40B

  • Name
    LTR40B
  • Repbase
    LTR40B
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000515
Description :

5 bp TSDs.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttgggagacaattctccatgggtctctcgcgtttctgcacgtcttgcgagcagagcactgactgccttttnttccggactatcttttcaaggatgtttgtatagcgaacagccttggaagatagagatagtgtctccctccggagcaaagggcaggcatgcttactgcccattataaaagattcgggttccctaagctcagggttcctctcctgtaacgcaacccactgcgtgtgcagcatccacctggncctcttcgcgtcgcccctgtgggaattggggnncaaggggaaccgacgcaaatgctgatactctngctgcctgctgtgctgtgagtaataaagtcctttgtctctgacccaggagtctcgtgtcttctgccagcatccatgaaactgtggcaggctaacttgttagcttgcaagtagggtaaaatctcagacccttcacagttcttgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 48 99.0 Highly correlated
2 ZNF766 19 43.0 Weakly correlated
3 ZNF680 17 28.9 Weakly correlated
4 ZNF317 17 99.0 Highly correlated
5 ZNF394 13 99.0 Highly correlated
6 ZNF589 12 28.9 Weakly correlated
7 ZNF793 12 99.0 Highly correlated
8 ZNF679 10 28.9 Weakly correlated
9 ZKSCAN1 10 160.0 Weakly correlated
10 ZFP57 8 87.0 Moderately correlated
11 ZNF701 8 28.9 Weakly correlated
12 ZNF2 8 99.0 Highly correlated
13 ZNF486 7 8.6 Weakly correlated
14 ZNF558 6 99.0 Highly correlated
15 ZNF534 6 19.6 Weakly correlated
16 ZFP37 6 99.0 Highly correlated
17 ZNF263 6 180.0 Weakly correlated
18 ZNF175 6 94.0 Moderately correlated
19 ZKSCAN8 6 160.0 Weakly correlated
20 ZNF610 5 28.9 Weakly correlated
21 ZNF584 5 99.0 Highly correlated
22 ZIM3 5 87.0 Moderately correlated
23 ZNF197 4 99.0 Highly correlated
24 ZNF18 4 160.0 Weakly correlated
25 ZNF324 4 99.0 Highly correlated
26 ZNF597 3 94.0 Moderately correlated
27 ZNF613 3 99.0 Highly correlated
28 ZNF723 3 15.2 Weakly correlated
29 ZNF554 3 99.0 Highly correlated
30 ZNF547 3 74.0 Weakly correlated
31 ZNF490 3 43.0 Weakly correlated
32 ZNF331 3 94.0 Moderately correlated
33 ZNF141 3 43.0 Weakly correlated
34 ZFP69B 3 99.0 Highly correlated
35 ZNF92 2 28.9 Weakly correlated
36 ZNF514 2 94.0 Moderately correlated
37 ZNF528 2 43.0 Weakly correlated
38 ZFP28 2 99.0 Highly correlated
39 ZNF641 2 99.0 Highly correlated
40 ZNF44 2 43.0 Weakly correlated
41 ZNF792 2 94.0 Moderately correlated
42 ZNF705B 2 28.9 Weakly correlated
43 ZNF264 2 99.0 Highly correlated
44 ZNF274 2 99.0 Highly correlated
45 ZNF101 2 43.0 Weakly correlated
46 ZNF585B 2 99.0 Highly correlated
47 ZNF705D 2 28.9 Weakly correlated
48 ZNF479 1 6.4 Weakly correlated
49 ZNF133 1 99.0 Highly correlated
50 ZKSCAN5 1 160.0 Weakly correlated
51 ZNF77 1 87.0 Moderately correlated
52 ZNF93 1 8.6 Weakly correlated
53 ZNF816 1 28.9 Weakly correlated
54 ZNF823 1 43.0 Weakly correlated
55 ZNF8 1 99.0 Highly correlated
56 ZNF251 1 94.0 Moderately correlated
57 ZNF253 1 19.6 Weakly correlated
58 ZNF257 1 0.0 Weakly correlated
59 ZNF586 1 43.0 Weakly correlated
60 ZNF287 1 99.0 Highly correlated
61 ZNF567 1 99.0 Highly correlated
62 ZNF563 1 28.9 Weakly correlated
63 ZNF429 1 28.9 Weakly correlated
64 ZNF550 1 94.0 Moderately correlated
65 ZNF549 1 87.0 Moderately correlated
66 ZNF440 1 28.9 Weakly correlated
67 ZNF441 1 43.0 Weakly correlated
68 ZNF506 1 28.9 Weakly correlated
69 ZNF485 1 94.0 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF793 4 99.0 Highly correlated
2 ZNF141 3 43.0 Weakly correlated
3 ZNF679 3 28.9 Weakly correlated
4 ZNF680 3 28.9 Weakly correlated
5 ZNF317 3 99.0 Highly correlated
6 ZNF534 3 19.6 Weakly correlated
7 ZNF701 2 28.9 Weakly correlated
8 ZNF485 1 94.0 Moderately correlated
9 ZFP37 1 99.0 Highly correlated
10 ZNF44 1 43.0 Weakly correlated
11 ZNF723 1 15.2 Weakly correlated
12 ZNF382 1 99.0 Highly correlated
13 ZNF589 1 28.9 Weakly correlated
14 ZNF257 1 0.0 Weakly correlated
15 ZNF554 1 99.0 Highly correlated
16 ZNF597 1 94.0 Moderately correlated
17 ZNF792 1 94.0 Moderately correlated
18 ZKSCAN1 1 160.0 Weakly correlated
19 ZIM3 1 87.0 Moderately correlated
20 ZFP57 1 87.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats