ZRdb KZFP & Repeats
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LTR_LTR40A1

  • Name
    LTR40A1
  • Repbase
    LTR40A1
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000514
Description :

Contains low complexity region.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtcgggagacaattctccatgaatattttcacgtttctgcacggtcagggctttctgagcaaagancactggcaacctgggttaaaggatgattgaatggcaaacatgccttggaagttagagatagtgtattgctccggagagatttagagacttatctcccccggagccatttgcttacattccaagggtagtaaacctagagaccttcccctcctctccccagagaggatttgtttacattccagagcaaaggtctctctctctctctctaggagggaggangggcagatgtgccagcngccctatataagctccgagtctcataatttcggggttcctctcctgtggtgcaaccccgctgcacgcgcaggtgaacatctggccctcatcgcgtcgccccgtggggaattggggcgtggggaaccggcgctaagatgctctgtgagtaataaacggtctgttctctgatccagagatctcgtgtttcctgtcagnatatatatataaaactgtggcaggctaacttgttagcttgcaagtagggtaaaatctcagacccttcacagtttctgacttaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 31 99.0 Highly correlated
2 ZNF263 9 180.0 Weakly correlated
3 ZNF705B 8 28.9 Weakly correlated
4 ZIM3 5 87.0 Moderately correlated
5 ZFP37 5 99.0 Highly correlated
6 ZNF766 5 43.0 Weakly correlated
7 ZNF584 4 99.0 Highly correlated
8 ZNF479 4 6.4 Weakly correlated
9 ZNF514 4 94.0 Moderately correlated
10 ZNF534 4 19.6 Weakly correlated
11 ZNF589 4 28.9 Weakly correlated
12 ZNF705D 4 28.9 Weakly correlated
13 ZKSCAN1 4 160.0 Weakly correlated
14 ZNF701 3 28.9 Weakly correlated
15 ZNF723 3 15.2 Weakly correlated
16 ZNF679 3 28.9 Weakly correlated
17 ZNF549 2 87.0 Moderately correlated
18 ZNF610 2 28.9 Weakly correlated
19 ZNF2 2 99.0 Highly correlated
20 ZNF680 2 28.9 Weakly correlated
21 ZNF394 2 99.0 Highly correlated
22 ZNF324 2 99.0 Highly correlated
23 ZNF682 2 28.9 Weakly correlated
24 ZNF18 2 160.0 Weakly correlated
25 ZNF175 2 94.0 Moderately correlated
26 ZFP69B 2 99.0 Highly correlated
27 ZNF793 1 99.0 Highly correlated
28 ZNF597 1 94.0 Moderately correlated
29 ZNF563 1 28.9 Weakly correlated
30 ZNF554 1 99.0 Highly correlated
31 ZNF547 1 74.0 Weakly correlated
32 ZNF490 1 43.0 Weakly correlated
33 ZNF486 1 8.6 Weakly correlated
34 ZNF28 1 28.9 Weakly correlated
35 ZNF274 1 99.0 Highly correlated
36 ZNF197 1 99.0 Highly correlated
37 ZNF169 1 94.0 Moderately correlated
38 ZNF133 1 99.0 Highly correlated
39 ZNF101 1 43.0 Weakly correlated
40 ZKSCAN8 1 160.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 3 87.0 Moderately correlated
2 ZNF263 3 180.0 Weakly correlated
3 ZNF382 2 99.0 Highly correlated
4 ZFP37 1 99.0 Highly correlated
5 ZNF479 1 6.4 Weakly correlated
6 ZNF701 1 28.9 Weakly correlated
7 ZNF705D 1 28.9 Weakly correlated
8 ZNF723 1 15.2 Weakly correlated
9 ZNF705B 1 28.9 Weakly correlated
10 ZNF766 1 43.0 Weakly correlated
11 ZNF793 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats