ZRdb KZFP & Repeats
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LTR_LTR40A

  • Name
    LTR40A
  • Repbase
    LTR40A
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000513
Description :

5 bp TSDs.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttgggagacaattctccatgggtctctcgcgtttctgcacgtcttgcgagcagaggcactgactgcctttgttccggactatcttttcaaggatgtttgtatagcgaacagccttggaagatagagatagtgtctccctccggagcaaagggcaggtttgcttactagcctngnanaataaagataatgtctccctccggggcaaagggcaggcatgcttactgcccattataaaagattcgggtttcctaagctcggggttcctcnnctgtgacgcaaacccactgcgtgtgcagnnntcacctggnccccttcgcgtcgccctcgtgggacttgggggncaaggggaaccgacgcaaacatgangctcatgctgcctgctgtgccgtgagtaataaagtcctttgtctctgacccaggagtctcgtgtcttctgccagcatccatgaaactgtggcaggctaacttgttagcttgcaagtagggtaaaatctcagacccttcacagttcttgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 50 99.0 Highly correlated
2 ZNF766 26 43.0 Weakly correlated
3 ZNF679 24 28.9 Weakly correlated
4 ZNF317 19 99.0 Highly correlated
5 ZIM3 16 87.0 Moderately correlated
6 ZNF479 15 6.4 Weakly correlated
7 ZNF793 15 99.0 Highly correlated
8 ZNF701 15 28.9 Weakly correlated
9 ZNF680 14 28.9 Weakly correlated
10 ZKSCAN1 13 160.0 Weakly correlated
11 ZNF175 12 94.0 Moderately correlated
12 ZNF263 10 180.0 Weakly correlated
13 ZNF514 10 94.0 Moderately correlated
14 ZNF394 10 99.0 Highly correlated
15 ZNF324 9 99.0 Highly correlated
16 ZNF584 9 99.0 Highly correlated
17 ZNF705B 8 28.9 Weakly correlated
18 ZNF251 8 94.0 Moderately correlated
19 ZNF597 8 94.0 Moderately correlated
20 ZNF18 7 160.0 Weakly correlated
21 ZNF589 6 28.9 Weakly correlated
22 ZNF528 6 43.0 Weakly correlated
23 ZNF140 6 99.0 Highly correlated
24 ZNF723 6 15.2 Weakly correlated
25 ZNF705D 6 28.9 Weakly correlated
26 ZFP37 5 99.0 Highly correlated
27 ZFP57 5 87.0 Moderately correlated
28 ZFP69B 5 99.0 Highly correlated
29 ZNF554 4 99.0 Highly correlated
30 ZNF534 4 19.6 Weakly correlated
31 ZNF101 4 43.0 Weakly correlated
32 ZNF613 4 99.0 Highly correlated
33 ZNF585B 4 99.0 Highly correlated
34 ZNF610 4 28.9 Weakly correlated
35 ZNF549 3 87.0 Moderately correlated
36 ZNF558 3 99.0 Highly correlated
37 ZNF92 3 28.9 Weakly correlated
38 ZNF486 3 8.6 Weakly correlated
39 ZNF44 3 43.0 Weakly correlated
40 ZNF441 3 43.0 Weakly correlated
41 ZNF202 2 160.0 Weakly correlated
42 ZNF257 2 0.0 Weakly correlated
43 ZNF197 2 99.0 Highly correlated
44 ZNF287 2 99.0 Highly correlated
45 ZNF2 2 99.0 Highly correlated
46 ZNF778 2 74.0 Weakly correlated
47 ZNF786 2 99.0 Highly correlated
48 ZNF582 2 99.0 Highly correlated
49 ZNF429 2 28.9 Weakly correlated
50 ZNF471 2 94.0 Moderately correlated
51 ZNF506 2 28.9 Weakly correlated
52 ZNF490 2 43.0 Weakly correlated
53 ZKSCAN8 1 160.0 Weakly correlated
54 ZNF792 1 94.0 Moderately correlated
55 ZNF878 1 43.0 Weakly correlated
56 ZNF879 1 99.0 Highly correlated
57 ZNF141 1 43.0 Weakly correlated
58 ZNF91 1 6.0 Weakly correlated
59 ZNF75D 1 94.0 Moderately correlated
60 ZNF735 1 28.9 Weakly correlated
61 ZNF160 1 74.0 Weakly correlated
62 ZNF182 1 99.0 Highly correlated
63 ZFP30 1 99.0 Highly correlated
64 ZNF700 1 28.9 Weakly correlated
65 ZNF253 1 19.6 Weakly correlated
66 ZNF675 1 8.6 Weakly correlated
67 ZNF273 1 28.9 Weakly correlated
68 ZNF611 1 19.6 Weakly correlated
69 ZNF284 1 43.0 Weakly correlated
70 ZNF28 1 28.9 Weakly correlated
71 ZNF585A 1 99.0 Highly correlated
72 ZNF320 1 28.9 Weakly correlated
73 ZNF583 1 99.0 Highly correlated
74 ZNF573 1 94.0 Moderately correlated
75 ZNF334 1 99.0 Highly correlated
76 ZNF34 1 99.0 Highly correlated
77 ZNF41 1 99.0 Highly correlated
78 ZNF43 1 43.0 Weakly correlated
79 ZNF510 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF701 14 28.9 Weakly correlated
2 ZNF793 11 99.0 Highly correlated
3 ZNF479 10 6.4 Weakly correlated
4 ZKSCAN1 4 160.0 Weakly correlated
5 ZNF766 4 43.0 Weakly correlated
6 ZIM3 3 87.0 Moderately correlated
7 ZNF679 3 28.9 Weakly correlated
8 ZNF44 3 43.0 Weakly correlated
9 ZNF528 3 43.0 Weakly correlated
10 ZNF317 3 99.0 Highly correlated
11 ZNF324 2 99.0 Highly correlated
12 ZFP57 2 87.0 Moderately correlated
13 ZNF263 2 180.0 Weakly correlated
14 ZNF257 2 0.0 Weakly correlated
15 ZNF140 2 99.0 Highly correlated
16 ZNF534 2 19.6 Weakly correlated
17 ZNF723 2 15.2 Weakly correlated
18 ZNF597 2 94.0 Moderately correlated
19 ZNF429 2 28.9 Weakly correlated
20 ZNF2 1 99.0 Highly correlated
21 ZNF778 1 74.0 Weakly correlated
22 ZNF251 1 94.0 Moderately correlated
23 ZNF680 1 28.9 Weakly correlated
24 ZNF585B 1 99.0 Highly correlated
25 ZNF18 1 160.0 Weakly correlated
26 ZNF141 1 43.0 Weakly correlated
27 ZNF471 1 94.0 Moderately correlated
28 ZNF320 1 28.9 Weakly correlated
29 ZNF101 1 43.0 Weakly correlated
30 ZNF675 1 8.6 Weakly correlated
31 ZNF202 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats