ZRdb KZFP & Repeats
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LTR_LTR4

  • Name
    LTR4
  • Repbase
    LTR4
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000512
Description :

LTR of HERV3 (class I). 4 bp TSDs.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgaagcaggagatataaaaagaaagaaagagagaaaaacaagttttctgtactaggctgactcactccaaggcccagcgataggcagggctctgncagggctttgataacactatctgcaaagccggggcccagaaggaatgggctccagagnctctccctcccnncccggagcagggatgagaaaaacaagttcttcttatcagcttccccctttgaaattctttccccataccattattcctttgttctgctctcataactatttttgtaactatttctgcaagtttgcaaggattttgtaagttcctgttttcccntctgtgcagcacggcgaaggtcacaagacatgcctgagttgcaaaacctgtcactgtttgatnaactgcctttgttctgcttctgtaagcttgcttgcccgccccgcgggtttcgcgccactaactggccancccctttcagatgcatgtataaaagtcaagccctgtctttgttcggggctcagcctttggatgttaatccgctgggccggtggccacctaataaaatcctcctgttccacccattggtctctccggtcccctgattcccgcaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF845 52 28.9 Highly correlated
2 ZNF766 36 43.0 Weakly correlated
3 ZNF382 30 99.0 Weakly correlated
4 ZKSCAN8 29 160.0 Weakly correlated
5 ZNF589 27 28.9 Highly correlated
6 ZNF175 25 94.0 Weakly correlated
7 ZNF197 22 99.0 Weakly correlated
8 ZKSCAN1 20 160.0 Weakly correlated
9 ZNF18 20 160.0 Weakly correlated
10 ZNF584 15 99.0 Weakly correlated
11 ZNF554 11 99.0 Weakly correlated
12 ZNF320 11 28.9 Highly correlated
13 ZFP37 10 99.0 Weakly correlated
14 ZNF549 9 87.0 Weakly correlated
15 ZNF317 9 99.0 Weakly correlated
16 ZNF547 8 74.0 Weakly correlated
17 ZNF324 8 99.0 Weakly correlated
18 ZNF274 8 99.0 Weakly correlated
19 ZNF2 8 99.0 Weakly correlated
20 ZNF793 8 99.0 Weakly correlated
21 ZNF610 7 28.9 Highly correlated
22 ZNF394 7 99.0 Weakly correlated
23 ZNF30 6 94.0 Weakly correlated
24 ZNF558 6 99.0 Weakly correlated
25 ZNF701 6 28.9 Highly correlated
26 ZNF506 6 28.9 Highly correlated
27 ZNF679 5 28.9 Highly correlated
28 ZNF680 5 28.9 Highly correlated
29 ZNF486 4 8.6 Weakly correlated
30 ZNF816 4 28.9 Highly correlated
31 ZNF534 4 19.6 Moderately correlated
32 ZNF528 4 43.0 Weakly correlated
33 ZNF8 4 99.0 Weakly correlated
34 ZFP57 4 87.0 Weakly correlated
35 ZNF263 4 180.0 Weakly correlated
36 ZNF264 4 99.0 Weakly correlated
37 ZNF682 3 28.9 Highly correlated
38 ZNF669 3 43.0 Weakly correlated
39 ZNF585B 3 99.0 Weakly correlated
40 ZNF765 3 8.6 Weakly correlated
41 ZNF189 3 99.0 Weakly correlated
42 ZNF34 2 99.0 Weakly correlated
43 ZNF184 2 99.0 Weakly correlated
44 ZNF75A 2 94.0 Weakly correlated
45 ZNF440 2 28.9 Highly correlated
46 ZNF44 2 43.0 Weakly correlated
47 ZNF251 2 94.0 Weakly correlated
48 ZNF778 1 74.0 Weakly correlated
49 ZNF786 1 99.0 Weakly correlated
50 ZNF716 1 19.6 Moderately correlated
51 ZNF182 1 99.0 Weakly correlated
52 ZNF705B 1 28.9 Highly correlated
53 ZNF222 1 43.0 Weakly correlated
54 ZNF101 1 43.0 Weakly correlated
55 ZNF695 1 28.9 Highly correlated
56 ZNF641 1 99.0 Weakly correlated
57 ZNF224 1 69.0 Weakly correlated
58 ZNF479 1 6.4 Weakly correlated
59 ZNF597 1 94.0 Weakly correlated
60 ZNF586 1 43.0 Weakly correlated
61 ZNF28 1 28.9 Highly correlated
62 ZNF559 1 74.0 Weakly correlated
63 ZNF33A 1 99.0 Weakly correlated
64 ZNF37A 1 99.0 Weakly correlated
65 ZNF418 1 43.0 Weakly correlated
66 ZNF419 1 28.9 Highly correlated
67 ZNF510 1 99.0 Weakly correlated
68 ZNF490 1 43.0 Weakly correlated
69 ZNF468 1 28.9 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF589 8 28.9 Highly correlated
2 ZNF845 8 28.9 Highly correlated
3 ZNF175 7 94.0 Weakly correlated
4 ZNF197 6 99.0 Weakly correlated
5 ZNF320 5 28.9 Highly correlated
6 ZNF506 4 28.9 Highly correlated
7 ZNF584 4 99.0 Weakly correlated
8 ZNF793 4 99.0 Weakly correlated
9 ZNF680 3 28.9 Highly correlated
10 ZNF534 2 19.6 Moderately correlated
11 ZNF440 2 28.9 Highly correlated
12 ZNF682 2 28.9 Highly correlated
13 ZNF189 2 99.0 Weakly correlated
14 ZNF679 1 28.9 Highly correlated
15 ZNF695 1 28.9 Highly correlated
16 ZNF479 1 6.4 Weakly correlated
17 ZNF37A 1 99.0 Weakly correlated
18 ZNF554 1 99.0 Weakly correlated
19 ZNF264 1 99.0 Weakly correlated
20 ZNF18 1 160.0 Weakly correlated
21 ZKSCAN1 1 160.0 Weakly correlated
22 ZNF701 1 28.9 Highly correlated
23 ZNF468 1 28.9 Highly correlated
24 ZKSCAN8 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF175 94.0 Weakly correlated
2 ZNF197 99.0 Weakly correlated
3 ZNF589 28.9 Highly correlated