ZRdb KZFP & Repeats
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LTR_LTR3B

  • Name
    LTR3B
  • Repbase
    LTR3B
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000510
Description :

6 bp TSDs.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttgcaggccgaaagagtgagggtcgtgatcaactcagtataccactggaggctatatgagtaaacagcaaactgttctcatgaangcaggatgttggcaaactgacaaactgcgtctgccgcccagaaggaatgctgagggcagtcacgccccaggcgcangtgtttcttgtgattaggcacatctgaagcctgttagcaataatgtgaacctgtgatcaatcaagcagctgaccaatcgttacctcctcctccctgctctttctacccaataaatacgaagggctgtagaagctcagggcggctgcccttgctcactagaagcagggagcccccttcttcntccccggaccccttctttaaaacagnttcttttgtcttnagttttcatttctgcgttcgtcccccttcgttcagtcccgtagtaaccgtggca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 27 99.0 Weakly correlated
2 ZNF18 8 160.0 Weakly correlated
3 ZIM3 7 87.0 Weakly correlated
4 ZNF749 7 28.9 Highly correlated
5 ZFP37 6 99.0 Weakly correlated
6 ZKSCAN8 6 160.0 Weakly correlated
7 ZNF324 6 99.0 Weakly correlated
8 ZNF766 6 43.0 Weakly correlated
9 ZFP57 5 87.0 Weakly correlated
10 ZNF394 5 99.0 Weakly correlated
11 ZNF701 5 28.9 Highly correlated
12 ZNF792 4 94.0 Weakly correlated
13 ZNF2 4 99.0 Weakly correlated
14 ZNF140 4 99.0 Weakly correlated
15 ZKSCAN1 4 160.0 Weakly correlated
16 ZNF589 4 28.9 Highly correlated
17 ZNF175 3 94.0 Weakly correlated
18 ZNF92 2 28.9 Highly correlated
19 ZNF679 2 28.9 Highly correlated
20 ZNF584 2 99.0 Weakly correlated
21 ZNF263 2 180.0 Weakly correlated
22 ZFP69B 2 99.0 Weakly correlated
23 ZNF554 1 99.0 Weakly correlated
24 ZNF558 1 99.0 Weakly correlated
25 ZNF528 1 43.0 Weakly correlated
26 ZNF490 1 43.0 Weakly correlated
27 ZNF610 1 28.9 Highly correlated
28 ZNF417 1 28.9 Highly correlated
29 ZNF680 1 28.9 Highly correlated
30 ZNF28 1 28.9 Highly correlated
31 ZNF705B 1 28.9 Highly correlated
32 ZNF75A 1 94.0 Weakly correlated
33 ZNF230 1 28.9 Highly correlated
34 ZNF197 1 99.0 Weakly correlated
35 ZNF8 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 5 87.0 Weakly correlated
2 ZNF701 4 28.9 Highly correlated
3 ZFP37 1 99.0 Weakly correlated
4 ZNF554 1 99.0 Weakly correlated
5 ZNF175 1 94.0 Weakly correlated
6 ZNF197 1 99.0 Weakly correlated
7 ZNF584 1 99.0 Weakly correlated
8 ZNF589 1 28.9 Highly correlated
9 ZNF679 1 28.9 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats