ZRdb KZFP & Repeats
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LTR_LTR3A

  • Name
    LTR3A
  • Repbase
    LTR3A
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000509
Description :

Copies present at orthologous sites in rhesus and baboon, preciselyabsent in marmoset.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgcagggagccgaaggcccgtgggacgtgaccaactcagcattccactggaggctatatgatcaaacagcaaactgtttatcatgaatgcaggatgtgggcaaactcacgactgcgcctgccgccagaaggtttgctgagggcnatcactccctggcgccgggctccttgaggttatctactgngacatctagagcctattgttcgaggaatgcagtcttgcaagcctgctctggaccgagcagctgaccccttcttccacccccccttctcgctatctcttttgcctaataaatacggagggctgtgtaaagctcagggcccttgtccactagaggcaaggtgccccctgaccccttcttccaaatatactcttttgtctcttgtcttttattcccgcgttcgcccccctttgttcagtcccccnaggtccgtgcgggttacatagtggcgccccgaacagcgacagaatcgggtgctctaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF701 19 28.9 Highly correlated
2 ZNF257 18 0.0 Weakly correlated
3 ZNF766 10 43.0 Weakly correlated
4 ZNF28 8 28.9 Highly correlated
5 ZNF382 7 99.0 Weakly correlated
6 ZNF417 6 28.9 Highly correlated
7 ZKSCAN1 5 160.0 Weakly correlated
8 ZNF589 5 28.9 Highly correlated
9 ZNF92 4 28.9 Highly correlated
10 ZNF197 3 99.0 Weakly correlated
11 ZIM3 3 87.0 Weakly correlated
12 ZNF394 3 99.0 Weakly correlated
13 ZNF75A 2 94.0 Weakly correlated
14 ZNF587 2 28.9 Highly correlated
15 ZNF584 2 99.0 Weakly correlated
16 ZNF816 2 28.9 Highly correlated
17 ZNF534 2 19.6 Moderately correlated
18 ZNF479 2 6.4 Weakly correlated
19 ZFP57 2 87.0 Weakly correlated
20 ZKSCAN8 2 160.0 Weakly correlated
21 ZNF175 2 94.0 Weakly correlated
22 ZNF263 2 180.0 Weakly correlated
23 ZNF679 1 28.9 Highly correlated
24 ZFP37 1 99.0 Weakly correlated
25 ZNF793 1 99.0 Weakly correlated
26 ZNF786 1 99.0 Weakly correlated
27 ZNF133 1 99.0 Weakly correlated
28 ZNF75D 1 94.0 Weakly correlated
29 ZNF189 1 99.0 Weakly correlated
30 ZNF680 1 28.9 Highly correlated
31 ZNF439 1 8.6 Weakly correlated
32 ZNF18 1 160.0 Weakly correlated
33 ZNF274 1 99.0 Weakly correlated
34 ZNF563 1 28.9 Highly correlated
35 ZNF320 1 28.9 Highly correlated
36 ZNF528 1 43.0 Weakly correlated
37 ZNF324 1 99.0 Weakly correlated
38 ZNF471 1 94.0 Weakly correlated
39 ZNF445 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF257 13 0.0 Weakly correlated
2 ZNF701 11 28.9 Highly correlated
3 ZNF417 6 28.9 Highly correlated
4 ZNF28 5 28.9 Highly correlated
5 ZNF816 2 28.9 Highly correlated
6 ZKSCAN1 1 160.0 Weakly correlated
7 ZNF479 1 6.4 Weakly correlated
8 ZNF587 1 28.9 Highly correlated
9 ZNF766 1 43.0 Weakly correlated
10 ZNF679 1 28.9 Highly correlated
11 ZNF263 1 180.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF257 0.0 Weakly correlated
2 ZNF701 28.9 Highly correlated