ZRdb KZFP & Repeats
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LTR_LTR39

  • Name
    LTR39
  • Repbase
    LTR39
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000507
Description :

4 bp TSDs.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgagacggagcagggaccccctcttaggggcctgccgggcgcccccccccaagcatggaaataaaggaaaatcttgagttccttcaagggaaattccaggcacctagctagccctgagaagtaaatgagcaacttgataagcaagaaggtaatagtagcttaaaacaatagccaaggaagttagagtcacgagatgtttggttcccctatagaaactaaagataacatcttaacatatgtccctgagttgtttttcagaaacccggacccccaccaaacggatccgctggcacgtagacctcagataagggggaactgaggactgaactctgaccgccgttctttgttctaaatttcttcctgaggggcctggaggaagtcacgcccacgagccagagctaacattcttttctgctgaccccaaatttttagacaaagcttcncttccttaaccaattgcaaatcagaaaatctttgaatccacctatgacctgtaagcccccgcttcaagatatcccgcctttttaggccaaaccaatgtataacctccatgtattgatttacgattttgcctgtaacttctgctttcctgaaatttacccctgcctttaaaaacccttacctgcaagccatcggggaggtcgggtcttaagcgtgagctgcccgattctccttgcttggcgccctgcaaataaacgccttcctttctcccgctgcaaacctcggtgtggatgtttggctttactgcgccgggcgagcggaccccagttcggttcggtaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 33 43.0 Highly correlated
2 ZNF382 25 99.0 Weakly correlated
3 ZNF823 23 43.0 Highly correlated
4 ZNF680 20 28.9 Moderately correlated
5 ZNF723 16 15.2 Weakly correlated
6 ZNF175 15 94.0 Weakly correlated
7 ZNF793 15 99.0 Weakly correlated
8 ZNF584 13 99.0 Weakly correlated
9 ZNF197 12 99.0 Weakly correlated
10 ZNF28 12 28.9 Moderately correlated
11 ZNF394 11 99.0 Weakly correlated
12 ZKSCAN8 10 160.0 Weakly correlated
13 ZNF679 9 28.9 Moderately correlated
14 ZNF589 9 28.9 Moderately correlated
15 ZNF263 8 180.0 Weakly correlated
16 ZNF251 7 94.0 Weakly correlated
17 ZNF547 5 74.0 Weakly correlated
18 ZNF317 5 99.0 Weakly correlated
19 ZNF534 4 19.6 Weakly correlated
20 ZNF486 4 8.6 Weakly correlated
21 ZFP37 4 99.0 Weakly correlated
22 ZNF441 4 43.0 Highly correlated
23 ZNF701 3 28.9 Moderately correlated
24 ZNF705B 3 28.9 Moderately correlated
25 ZNF479 3 6.4 Weakly correlated
26 ZNF735 3 28.9 Moderately correlated
27 ZFP69B 3 99.0 Weakly correlated
28 ZIM3 3 87.0 Weakly correlated
29 ZNF101 3 43.0 Highly correlated
30 ZNF471 3 94.0 Weakly correlated
31 ZNF705D 2 28.9 Moderately correlated
32 ZNF597 2 94.0 Weakly correlated
33 ZNF585B 2 99.0 Weakly correlated
34 ZNF140 2 99.0 Weakly correlated
35 ZNF257 2 0.0 Weakly correlated
36 ZNF75D 2 94.0 Weakly correlated
37 ZNF528 2 43.0 Highly correlated
38 ZNF506 2 28.9 Moderately correlated
39 ZNF490 2 43.0 Highly correlated
40 ZNF749 2 28.9 Moderately correlated
41 ZNF816 1 28.9 Moderately correlated
42 ZNF92 1 28.9 Moderately correlated
43 ZNF573 1 94.0 Weakly correlated
44 ZNF554 1 99.0 Weakly correlated
45 ZNF485 1 94.0 Weakly correlated
46 ZNF429 1 28.9 Moderately correlated
47 ZNF324 1 99.0 Weakly correlated
48 ZNF2 1 99.0 Weakly correlated
49 ZNF282 1 319.0 Weakly correlated
50 ZNF18 1 160.0 Weakly correlated
51 ZNF133 1 99.0 Weakly correlated
52 ZKSCAN1 1 160.0 Weakly correlated
53 ZFP69 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF723 10 15.2 Weakly correlated
2 ZNF793 9 99.0 Weakly correlated
3 ZNF584 4 99.0 Weakly correlated
4 ZNF28 3 28.9 Moderately correlated
5 ZNF589 3 28.9 Moderately correlated
6 ZNF680 3 28.9 Moderately correlated
7 ZNF735 3 28.9 Moderately correlated
8 ZNF263 3 180.0 Weakly correlated
9 ZNF101 2 43.0 Highly correlated
10 ZNF506 2 28.9 Moderately correlated
11 ZNF701 2 28.9 Moderately correlated
12 ZNF175 2 94.0 Weakly correlated
13 ZNF479 2 6.4 Weakly correlated
14 ZNF197 2 99.0 Weakly correlated
15 ZNF140 2 99.0 Weakly correlated
16 ZNF597 1 94.0 Weakly correlated
17 ZNF534 1 19.6 Weakly correlated
18 ZNF705D 1 28.9 Moderately correlated
19 ZNF528 1 43.0 Highly correlated
20 ZNF257 1 0.0 Weakly correlated
21 ZNF75D 1 94.0 Weakly correlated
22 ZNF766 1 43.0 Highly correlated
23 ZNF823 1 43.0 Highly correlated
24 ZNF394 1 99.0 Weakly correlated
25 ZFP69 1 99.0 Weakly correlated
26 ZNF485 1 94.0 Weakly correlated
27 ZIM3 1 87.0 Weakly correlated
28 ZNF705B 1 28.9 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF793 99.0 Weakly correlated