ZRdb KZFP & Repeats
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LTR_LTR38B

  • Name
    LTR38B
  • Repbase
    LTR38B
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000504
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtaaccgggcagcttaacttcaaaatgcattttaaaacttttttttccctttctcttgggtttcaagatataaccttgaagcaaactgcagaagccttttcccttagccttaaaatagactccacgtccctccctttctcaccgtatatactcccttcacatttatctaactgtatgctagtatctaattatgtgcctncttagaagttccaggggctaatcttgagacagacagaccaagcctggagacccagctgcaaaattccagagattacctcaaggcggctagtcaacaacccggccattgttgagatgacgccagcccgcgctccaggtggaccgggacccaagatagccaccggaacaagacacacagacnttgtactcagcacaattcctgcccgcgcgnnnnnnnatgccttccntatcaagttttccctttttaaacccctgccttccccctaaaaatcgaagtggttgctttggatgggaatccggccacttccccnttactagttttggttaataaagtcactttctttctaccagacctcgctcttgttaattggactctgcaagcggcgagcanccggacccgtgtcagttaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 11 99.0 Weakly correlated
2 ZKSCAN8 10 160.0 Weakly correlated
3 ZNF263 7 180.0 Weakly correlated
4 ZNF18 6 160.0 Weakly correlated
5 ZNF766 4 43.0 Weakly correlated
6 ZNF394 4 99.0 Weakly correlated
7 ZFP57 3 87.0 Weakly correlated
8 ZNF534 3 19.6 Weakly correlated
9 ZNF490 3 43.0 Weakly correlated
10 ZNF589 3 28.9 Weakly correlated
11 ZNF28 3 28.9 Weakly correlated
12 ZNF317 3 99.0 Weakly correlated
13 ZIM3 2 87.0 Weakly correlated
14 ZNF584 2 99.0 Weakly correlated
15 ZNF597 2 94.0 Weakly correlated
16 ZNF101 2 43.0 Weakly correlated
17 ZNF705B 1 28.9 Weakly correlated
18 ZNF679 1 28.9 Weakly correlated
19 ZNF735 1 28.9 Weakly correlated
20 ZNF793 1 99.0 Weakly correlated
21 ZNF816 1 28.9 Weakly correlated
22 ZNF92 1 28.9 Weakly correlated
23 ZNF554 1 99.0 Weakly correlated
24 ZNF549 1 87.0 Weakly correlated
25 ZNF479 1 6.4 Weakly correlated
26 ZNF445 1 99.0 Weakly correlated
27 ZNF433 1 43.0 Weakly correlated
28 ZNF284 1 43.0 Weakly correlated
29 ZNF197 1 99.0 Weakly correlated
30 ZNF175 1 94.0 Weakly correlated
31 ZNF169 1 94.0 Weakly correlated
32 ZNF160 1 74.0 Highly correlated
33 ZKSCAN1 1 160.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF28 2 28.9 Weakly correlated
2 ZIM3 1 87.0 Weakly correlated
3 ZNF101 1 43.0 Weakly correlated
4 ZNF735 1 28.9 Weakly correlated
5 ZNF18 1 160.0 Weakly correlated
6 ZNF490 1 43.0 Weakly correlated
7 ZNF816 1 28.9 Weakly correlated
8 ZNF445 1 99.0 Weakly correlated
9 ZNF382 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats