ZRdb KZFP & Repeats
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LTR_LTR38

  • Name
    LTR38
  • Repbase
    LTR38
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000502
Description :

LTR38 is a long terminal repeat from LTR-retroposon related to theMER4-int group. 4bp TSDs.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtaaccgagtatctcagcctcaaaatgcattttaaaacttttttctttttctttcttgctttcagccttgaaacgtactttgaaactctttgtttctccctttcccaccaggcactcccntgcacagtgctcgcttatctaattatgtgcttgcttagaaattccaggggctaatcttgaaacaaaccaggcanagagacccagctgcggaatcctcccgcttagggggagttacgaacagttagcccaccactaccgggccgaagtcaggatgacgccaaccggacctccagacgggcgatnactcaagatagccatcggaacaagacacgcagacctgcaccctcctgcaccactcccgcatgtttcccacacctttcccttcttaaaccccttcactcagcccaaaagtttgaaatggtttctttgaggcatgagcctggccatctcccanctgctagcatttgannaataaagctgctttcctttcaccacacctcgcttctcgtgttttcggcttctgagcggcgagcagccggacttgagccggttaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 6 43.0 Weakly correlated
2 ZNF589 6 28.9 Weakly correlated
3 ZNF175 3 94.0 Weakly correlated
4 ZNF382 3 99.0 Weakly correlated
5 ZNF584 3 99.0 Weakly correlated
6 ZNF101 2 43.0 Weakly correlated
7 ZNF679 2 28.9 Weakly correlated
8 ZNF597 2 94.0 Weakly correlated
9 ZNF534 1 19.6 Weakly correlated
10 ZNF92 1 28.9 Weakly correlated
11 ZNF91 1 6.0 Weakly correlated
12 ZNF823 1 43.0 Weakly correlated
13 ZNF75A 1 94.0 Weakly correlated
14 ZNF705D 1 28.9 Weakly correlated
15 ZNF705B 1 28.9 Weakly correlated
16 ZNF701 1 28.9 Weakly correlated
17 ZFP37 1 99.0 Weakly correlated
18 ZNF528 1 43.0 Weakly correlated
19 ZNF490 1 43.0 Weakly correlated
20 ZNF483 1 99.0 Weakly correlated
21 ZNF2 1 99.0 Weakly correlated
22 ZNF28 1 28.9 Weakly correlated
23 ZNF257 1 0.0 Weakly correlated
24 ZNF197 1 99.0 Weakly correlated
25 ZKSCAN8 1 160.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZFP37 1 99.0 Weakly correlated
2 ZNF584 1 99.0 Weakly correlated
3 ZNF528 1 43.0 Weakly correlated
4 ZNF534 1 19.6 Weakly correlated
5 ZNF490 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats