ZRdb KZFP & Repeats
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LTR_LTR38-INT

  • Name
    LTR38-INT
  • Repbase
    HERV38I
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000506
Description :

4 bp target site duplications. This covers a 5'-segment of the HERV38internal sequence.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
aatttggtgccccgtgtgaggagctgtgtgtttcgagcggctcagcctgtacgcctggtttccaacgagtggagcaattggccgcggcagcgcgccagggcttacccactcatgctaccgggcggggcggcggccgcttgcaaatgccagctgctcgtggccagctgaccccgcggctgggacctcagggaattcccagcagctgccgagancgcctttgtctcggggattttcccttccctccccttcatggcatcagctgctgcaatgctctgtcggtgnaaggaaagcggcatctgggaagtcgacggacttcaaggactgggtaagtcaaccggagtgcacccggaaatcctccgtctctgccgtctgggctctctagccatctggacctagcataggtcatctgtggtgccgtctgggcctctgtgccatctggacctaacgcaggtcactctgtggtgccgtctgggtttgagacaagatctcaggacttttctccagtctcccctctttngggatcggtttggagtgctccgtctgcatcggatccgtctgtgtttgtgtctctgtttagtgttacccctctctccgagggtgctttggcacggtctccatcccacccgccaagaccaggtccatctggttgtcagaaggcagcaagataggccgctcctctcctcnctaggggagaaacagtttccaacatcccggcccctgattttgtcatcctctttgggactccagagtatttcctgtatccgtgtcaagntttgttgggggagaaagcatgtgaactcttttctagactatctgggactccagctggttacatattatggcccgtttttgtgcacattttaaactgatgggcaaattacagtaaggaaaattcagagctcaaatggttaacctgcaactataaagttaagcagagtcttctaaagctctctattttctcttttcttttctgcctgctttgaatctgctgttattaagctactggtgttgagataaaactcactgtttcaaggttacttggagattttgtttttcttatacagttcagccagttctagctaaaatgtaaacattagaaactcatttgaaactgaagaaaaaagaaaaaagaggtaaaagaggtttttaaaacaaaactgccatagagactgctttacccaaattttggtccacagctttccttggattacctatcggggcaaacaaagtttagccatgtgaacaggttccaattttgtcagaaaaataatttggatccagctatcttttataaagtggtgagtttgtattgctatctcatggctagagttccgaggtaaaagctattggatctttgtgcatgtatgtatacatgtttagatatgtttatgtgtatgtacatgtattatgttatatgttgtgtctagcatgntaccaaattggcttataagtaaatgagtactcataaattaaataagtccaaatgcttttcaagttcacgtgaatctttggtaaataaaactggttttaaaattattgataaaaataaaatgtcttcagaattgtcagcatacatttttgtctgggtttactgatcagacggttttatatttgtctctgcctatatnttaaggtgtcaggatttggcataaaggttataagactataaacccagccaaaaacagaataatctttgtgtgattttttttgacaaataagactaatttaanattgttggttcaatgaaaacagctgaatcttctgagttatcggcaaaatgtgttta
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF793 4 99.0 Weakly correlated
2 ZFP57 4 87.0 Weakly correlated
3 ZNF766 3 43.0 Weakly correlated
4 ZNF382 3 99.0 Weakly correlated
5 ZNF485 2 94.0 Weakly correlated
6 ZNF490 1 43.0 Weakly correlated
7 ZNF93 1 8.6 Weakly correlated
8 ZNF705D 1 28.9 Weakly correlated
9 ZNF705B 1 28.9 Weakly correlated
10 ZNF674 1 99.0 Weakly correlated
11 ZNF597 1 94.0 Weakly correlated
12 ZNF587 1 28.9 Weakly correlated
13 ZNF554 1 99.0 Weakly correlated
14 ZNF534 1 19.6 Weakly correlated
15 ZNF433 1 43.0 Weakly correlated
16 ZNF394 1 99.0 Weakly correlated
17 ZNF28 1 28.9 Weakly correlated
18 ZNF248 1 99.0 Weakly correlated
19 ZNF197 1 99.0 Weakly correlated
20 ZNF182 1 99.0 Weakly correlated
21 ZNF12 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF793 3 99.0 Weakly correlated
2 ZNF485 2 94.0 Weakly correlated
3 ZFP57 1 87.0 Weakly correlated
4 ZNF394 1 99.0 Weakly correlated
5 ZNF534 1 19.6 Weakly correlated
6 ZNF433 1 43.0 Weakly correlated
7 ZNF248 1 99.0 Weakly correlated
8 ZNF597 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats