ZRdb KZFP & Repeats
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LTR_LTR37B

  • Name
    LTR37B
  • Repbase
    LTR37B
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000500
Description :

Found flanking sequences resembling the MER31 internal sequence 4 bpduplication sites.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttaaagaaaaattatccaaaacttggaaataaggcaaaaagatgactgcatgtcctttcaatgtcatactggagcattgtctaacaggcccacccaaggattatttaattntctaggggaatgtacctttgttgactttgctatttactatttgattagggcccagacnctgtgaagttacatgttaacttgtagatttctgtccggtagaaaagataaccccaaaggttacggttttattgccctgtaggacattaaccagttttgtatctaacttagcaatcttattccagcattcttctttactgaatgcctataaatacctagtttctcaaatgctctttgaaccagctttaccatcttactggttccctcattaatgagttaaataaaatctttgacacgtgttcattctatatttgtatgagagtcatgtttttaactttttgaaaattatactttgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 54 99.0 Highly correlated
2 ZNF510 18 99.0 Highly correlated
3 ZNF680 16 28.9 Weakly correlated
4 ZNF2 15 99.0 Highly correlated
5 ZNF766 13 43.0 Weakly correlated
6 ZNF394 12 99.0 Highly correlated
7 ZIM3 12 87.0 Moderately correlated
8 ZNF317 11 99.0 Highly correlated
9 ZNF18 10 160.0 Weakly correlated
10 ZNF263 9 180.0 Weakly correlated
11 ZFP37 7 99.0 Highly correlated
12 ZNF101 6 43.0 Weakly correlated
13 ZNF705B 6 28.9 Weakly correlated
14 ZNF705D 6 28.9 Weakly correlated
15 ZNF479 5 6.4 Weakly correlated
16 ZNF589 5 28.9 Weakly correlated
17 ZNF554 5 99.0 Highly correlated
18 ZNF175 5 94.0 Moderately correlated
19 ZNF251 4 94.0 Moderately correlated
20 ZNF597 4 94.0 Moderately correlated
21 ZNF610 4 28.9 Weakly correlated
22 ZNF701 4 28.9 Weakly correlated
23 ZKSCAN1 4 160.0 Weakly correlated
24 ZNF324 4 99.0 Highly correlated
25 ZNF257 3 0.0 Weakly correlated
26 ZNF679 3 28.9 Weakly correlated
27 ZFP69B 3 99.0 Highly correlated
28 ZNF547 3 74.0 Weakly correlated
29 ZNF878 3 43.0 Weakly correlated
30 ZNF197 3 99.0 Highly correlated
31 ZNF723 3 15.2 Weakly correlated
32 ZNF441 2 43.0 Weakly correlated
33 ZKSCAN8 2 160.0 Weakly correlated
34 ZNF320 2 28.9 Weakly correlated
35 ZNF490 2 43.0 Weakly correlated
36 ZNF584 2 99.0 Highly correlated
37 ZFP69 2 99.0 Highly correlated
38 ZNF778 2 74.0 Weakly correlated
39 ZFP57 2 87.0 Moderately correlated
40 ZNF92 1 28.9 Weakly correlated
41 ZNF674 1 99.0 Highly correlated
42 ZNF780A 1 43.0 Weakly correlated
43 ZNF792 1 94.0 Moderately correlated
44 ZNF695 1 28.9 Weakly correlated
45 ZNF823 1 43.0 Weakly correlated
46 ZNF84 1 99.0 Highly correlated
47 ZNF284 1 43.0 Weakly correlated
48 ZKSCAN2 1 180.0 Weakly correlated
49 ZKSCAN5 1 160.0 Weakly correlated
50 ZNF133 1 99.0 Highly correlated
51 ZNF182 1 99.0 Highly correlated
52 ZNF184 1 99.0 Highly correlated
53 ZNF189 1 99.0 Highly correlated
54 ZNF264 1 99.0 Highly correlated
55 ZNF273 1 28.9 Weakly correlated
56 ZNF274 1 99.0 Highly correlated
57 ZNF595 1 43.0 Weakly correlated
58 ZNF485 1 94.0 Moderately correlated
59 ZNF506 1 28.9 Weakly correlated
60 ZNF528 1 43.0 Weakly correlated
61 ZNF558 1 99.0 Highly correlated
62 ZNF559 1 74.0 Weakly correlated
63 ZNF568 1 99.0 Highly correlated
64 ZNF569 1 99.0 Highly correlated
65 ZNF573 1 94.0 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 5 87.0 Moderately correlated
2 ZNF479 3 6.4 Weakly correlated
3 ZNF101 3 43.0 Weakly correlated
4 ZNF723 2 15.2 Weakly correlated
5 ZNF510 2 99.0 Highly correlated
6 ZNF680 2 28.9 Weakly correlated
7 ZNF705D 2 28.9 Weakly correlated
8 ZNF2 1 99.0 Highly correlated
9 ZNF528 1 43.0 Weakly correlated
10 ZNF257 1 0.0 Weakly correlated
11 ZNF263 1 180.0 Weakly correlated
12 ZNF485 1 94.0 Moderately correlated
13 ZNF18 1 160.0 Weakly correlated
14 ZNF766 1 43.0 Weakly correlated
15 ZNF780A 1 43.0 Weakly correlated
16 ZNF705B 1 28.9 Weakly correlated
17 ZNF701 1 28.9 Weakly correlated
18 ZFP57 1 87.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats