ZRdb KZFP & Repeats
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LTR_LTR37A

  • Name
    LTR37A
  • Repbase
    LTR37A
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000499
Description :

It is found flanking sequences resembling the MER31 internal sequence 4bp duplication sites.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtagggaaaaattgtgcttcaatggaaaactatgcattgtctagagcacacccttccgggttatctgattctagctctgtcattgtctttgagctattttacaactctgtaagttgtaganaactgatagcaatgcaaaataattcttgtccataganatgcaaatgaattctgtccggtggaggtncaattgacttccttcccccactgtggaaaaagccagttttgcntccatttgcaaattcatttcagcattcctgattgcctataaatgtgtntgttctttgaattctcctttgaaccggttgtaacatcttactggttccctcattaattaatgagttaaataaaatctttgacacgtgttcattttatatttgtatgagagtcatgattttaccttttttgaaaattatcctttaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF510 72 99.0 Highly correlated
2 ZNF382 54 99.0 Highly correlated
3 ZNF766 32 43.0 Weakly correlated
4 ZNF394 24 99.0 Highly correlated
5 ZNF589 21 28.9 Weakly correlated
6 ZNF175 20 94.0 Moderately correlated
7 ZKSCAN8 17 160.0 Weakly correlated
8 ZNF2 15 99.0 Highly correlated
9 ZKSCAN1 15 160.0 Weakly correlated
10 ZNF197 13 99.0 Highly correlated
11 ZNF584 13 99.0 Highly correlated
12 ZNF101 12 43.0 Weakly correlated
13 ZIM3 11 87.0 Moderately correlated
14 ZNF680 10 28.9 Weakly correlated
15 ZNF263 9 180.0 Weakly correlated
16 ZNF679 8 28.9 Weakly correlated
17 ZNF723 8 15.2 Weakly correlated
18 ZNF140 7 99.0 Highly correlated
19 ZNF18 7 160.0 Weakly correlated
20 ZFP37 6 99.0 Highly correlated
21 ZNF317 6 99.0 Highly correlated
22 ZNF324 5 99.0 Highly correlated
23 ZNF486 5 8.6 Weakly correlated
24 ZNF274 4 99.0 Highly correlated
25 ZNF133 4 99.0 Highly correlated
26 ZNF92 4 28.9 Weakly correlated
27 ZNF534 4 19.6 Weakly correlated
28 ZNF264 4 99.0 Highly correlated
29 ZNF75D 4 94.0 Moderately correlated
30 ZFP69B 4 99.0 Highly correlated
31 ZNF610 3 28.9 Weakly correlated
32 ZNF701 3 28.9 Weakly correlated
33 ZNF558 3 99.0 Highly correlated
34 ZNF331 3 94.0 Moderately correlated
35 ZNF778 2 74.0 Weakly correlated
36 ZFP28 2 99.0 Highly correlated
37 ZNF735 2 28.9 Weakly correlated
38 ZNF816 2 28.9 Weakly correlated
39 ZNF707 2 74.0 Weakly correlated
40 ZNF28 2 28.9 Weakly correlated
41 ZNF547 2 74.0 Weakly correlated
42 ZNF705D 2 28.9 Weakly correlated
43 ZNF554 2 99.0 Highly correlated
44 ZNF705B 2 28.9 Weakly correlated
45 ZNF93 1 8.6 Weakly correlated
46 ZNF141 1 43.0 Weakly correlated
47 ZNF681 1 28.9 Weakly correlated
48 ZNF85 1 28.9 Weakly correlated
49 ZNF823 1 43.0 Weakly correlated
50 ZFP82 1 99.0 Highly correlated
51 ZNF75A 1 94.0 Moderately correlated
52 ZNF793 1 99.0 Highly correlated
53 ZNF786 1 99.0 Highly correlated
54 ZNF485 1 94.0 Moderately correlated
55 ZNF273 1 28.9 Weakly correlated
56 ZNF26 1 99.0 Highly correlated
57 ZNF41 1 99.0 Highly correlated
58 ZNF425 1 94.0 Moderately correlated
59 ZNF436 1 180.0 Weakly correlated
60 ZNF440 1 28.9 Weakly correlated
61 ZNF468 1 28.9 Weakly correlated
62 ZNF471 1 94.0 Moderately correlated
63 ZNF479 1 6.4 Weakly correlated
64 ZNF483 1 99.0 Highly correlated
65 ZNF597 1 94.0 Moderately correlated
66 ZNF490 1 43.0 Weakly correlated
67 ZNF519 1 19.6 Weakly correlated
68 ZNF528 1 43.0 Weakly correlated
69 ZNF549 1 87.0 Moderately correlated
70 ZNF555 1 94.0 Moderately correlated
71 ZNF563 1 28.9 Weakly correlated
72 ZNF251 1 94.0 Moderately correlated
73 ZNF585A 1 99.0 Highly correlated
74 ZNF248 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF510 9 99.0 Highly correlated
2 ZNF101 4 43.0 Weakly correlated
3 ZNF680 4 28.9 Weakly correlated
4 ZNF133 3 99.0 Highly correlated
5 ZNF140 3 99.0 Highly correlated
6 ZIM3 2 87.0 Moderately correlated
7 ZNF197 2 99.0 Highly correlated
8 ZNF547 2 74.0 Weakly correlated
9 ZNF723 2 15.2 Weakly correlated
10 ZNF382 2 99.0 Highly correlated
11 ZNF248 1 99.0 Highly correlated
12 ZNF585A 1 99.0 Highly correlated
13 ZNF534 1 19.6 Weakly correlated
14 ZNF558 1 99.0 Highly correlated
15 ZNF317 1 99.0 Highly correlated
16 ZNF485 1 94.0 Moderately correlated
17 ZNF75D 1 94.0 Moderately correlated
18 ZFP28 1 99.0 Highly correlated
19 ZNF2 1 99.0 Highly correlated
20 ZNF483 1 99.0 Highly correlated
21 ZNF705D 1 28.9 Weakly correlated
22 ZNF705B 1 28.9 Weakly correlated
23 ZNF528 1 43.0 Weakly correlated
24 ZNF394 1 99.0 Highly correlated
25 ZNF584 1 99.0 Highly correlated
26 ZNF471 1 94.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats