ZRdb KZFP & Repeats
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LTR_LTR37-INT

  • Name
    LTR37-INT
  • Repbase
    No find
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000501
Description :

Internal sequence of a MER4-group non-autonomous element with LTR37(A/B)LTRs. Contains tiny fragments of past coding regions at roughly1979-2083 (middle of pol) and 3859-3978 (env).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gttttggaggtcatccaccgagatgcccaagtggattcacctgacagagccaggtaaactgcgttgccggagaagtgcacctcatgggctgcttaagcccaggcacgtcttttcttggctcccggagtgaatcccaagcggcaatagaactttaactttgctgactctctgtttctctagttttnttcctctgtttttttnctgattcttggcgttttgtttttgtttctggttcgcgcacggccgataagttattccccattggtggcagcaatgattgggaatttggttttatggtctgaccatttggtgatctctgtaaatggattaatggttatagagatctattctctgttgggtgagagacgacagagaatctggtttgttagtcttttttgtttgtttgtttgtctattttgagctcaaatcaattaagaatttcgtgcccactgggaaggagaacagctctttganatctggaccggtgagtttttgtgtttctgtgtttacttttgacccgtggctgaagttgtagaactgaagctataagctctctgtgtgtctgtgtgtctgtaattnagaaaggcctttacctctcattgtgtgagtgtgaaatattttcctacctccggagggtattaataaattagattataaagtctcttaaattaaaggagctctgttctgattggtttatagagataaataagcgcttatataaatcgaatattcctaaaattcccagaaaataaggaaattgaacttctaatactttaaatgtgctagactttaaaaaaaaatattcttacagaaactgctagctcagaaacattttaagaatccaagttcacataattaaggtgaatctttggcaaatnagactggtttaataattttggtttaaaaaaaacagctatgtcttctctgatttatcagtgttaagtataatacaagcgtacatttttattctacttgggtttgttttctcatgaagagactagttaatctgaacttcctaaacttcttatacnggtttactgatcaaataagctaacattactcctacataatgtttaagattatgaaaaatgtaaatttgtgttcaactaaattgaatcatnattctgacaaactttatntcaacagtaattatgttttgtagtatgtcagcttaaanataatttccaagatctttaggtaacttaaaaccttggactaatattaaattgagttaattaatggataatcnttggatacctagataatttctaagtaagatagaatactgaaacattgattactaagcataattttaagtttatatacttttgcttcttatttttatatgctatagagnggctatatctttgggtcatgttaatgaacgtgttcatttttgccactttaagaaggtgtaaaagggatgtgtgtggctgtagaaagttgtgttatgtgtattcatgagctttgctagtctgctaaaatgcttgtgtatgacagacagttctcaattatccacctcccagttttctctgtgaaatagaagttagttactttggttaaaagttataattaatatgggtggttgagactatactaggagcaatagtgacagagaaatacaactgtgtatgcaaggtaatgggatgtgtttttgtttttcaaggaaaaaagagtagttttgtcctaaagtaaagtgtctggttgttccagaatatgaaagagnatagtgaaggacaaaacttgaatggatatagaaagttgtagaaggtttgnggaaagtgaattttatttgccttggtttataatacctgagtctgaaaagaagcnatgaaatgtgttaaaattttggcaaagttcgctcagttttgatgggcttattcataagattttnaaaaagagcttgtgaatcctttactgccaaatattatattaatgcaaaactagaatttggttttctctctgttaaaatgacaaattggtcttggagtatttagtctgctcttaacaagaggtagtaaaaggttattctttaccttctgtgtaatctgcccagatagcagagattccgtgtctcaccagaataattttctgtgctttgtgttgactttatcatgtccttgattatttaaaagaaaaaaaaagaacaaaggttcctcacttntgaaagagctaaggttccttacaatcgtgttaccttctatgtttattttnaaatattttattgtcactttgattaaataggtaaccaagtattgtttctcaggcacccatgatcctatcttaatcaagtgnccaaatctcctctgacaactcttttgattttgccttcccaagatcggatcctaaatttagaaaaaaaaaattttcaggatatcttttacacctaaaactatctttgagatttcccagagggcccctggaaaatcacaaagatttgttctttcaccttataaaaagagagatgctagaaataattaggtttgtttggtatgctccatatttcttaattagctcaacactattgtaagagctgcatgggaagagttgtcaaatcagaagagacgctcagccttccctaggttaantttgtataggtaaaatgttattaatataaatatttcagaaattgtacgctttatgggaagnccctggagatttgtcaatgccctcgctgtccataatatgttcttaccctcaggggaaacactgatcaaactcttatgaaatagttatgtactgtaccccaatagagaattttactctcctccattctgatattattggttactgtaataaattaaccacagccattnagtctcatcatcagataggtttctgctttnctctgatgcttgcctgaaggctctgctataagctacaggccagaatttgtgtcttcaacaaagaaggacagtctcagagcctcgtggaaaggactgtaccaggtactttnaactattgatacttcaaagaatagactcttgggtacaggcttctgagctgacatcgcttagacaactttcagaccgtaccagtggactgagtcaggatttccaggactctttttagtccagaagcagacgacttcatgaaagcagactgctgacccaagatccagcggaacaagaattaattacataggactgaatgaactgatgagggaaatttaattgtggttatttgtttggaatattgttgatattgttttaatgttctattttctggatatataaggaagccctttctctttcttcttaagctatctctaacccntaacaatttagtagactntgcttttgtaaactgaaatgaaacatttttaaatggtatctgattctcactgacccctccagaattcagaaacnaatacttttactgagtctccttacttttcatggcaatatagttatttgcataggttcaataagaatctgtcctcctttttaccaggatataattggacaaatcgattgtgcaaccaaggccntacctggagtgtcatatttgagaatgatnctcatttaatcaggtatgacaagccactnttaaggaacnaaggttgnactttatatgtggagccaatgcctacaaagccctcccaggaaaactggcctggtatncctggcttacagggtcccagccttacaggtggtaaggaaggtcacttcctggcaggccaggaaccttagcaaaatttgggggacctcgagaagagaggaattcacccaaatttataggtactgcaggtgaaatctggtggagagagtttcttgggcttggtttcctagcctcgggatagaagacaaataatagaggcttttaaaagtccaatccgagattccttatgaaaacttccagacagaagttaattctctggccttagtagttgctcaatactgtatggctctagatttgcaaagcaaactcaaggaggcctatatggttaattaacactcttgctgcacctatgtaaataatcaggccaaanctaatgagaccagccttttttgtgatcaagaataatctttggagattatttatgatcanaataggggga
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 59 99.0 Highly correlated
2 ZNF680 21 28.9 Weakly correlated
3 ZNF394 20 99.0 Highly correlated
4 ZIM3 13 87.0 Moderately correlated
5 ZNF679 12 28.9 Weakly correlated
6 ZNF101 10 43.0 Weakly correlated
7 ZNF766 10 43.0 Weakly correlated
8 ZFP37 9 99.0 Highly correlated
9 ZNF2 7 99.0 Highly correlated
10 ZNF197 6 99.0 Highly correlated
11 ZNF793 6 99.0 Highly correlated
12 ZNF558 6 99.0 Highly correlated
13 ZNF479 5 6.4 Weakly correlated
14 ZNF723 5 15.2 Weakly correlated
15 ZNF534 5 19.6 Weakly correlated
16 ZFP69B 5 99.0 Highly correlated
17 ZFP28 4 99.0 Highly correlated
18 ZNF264 4 99.0 Highly correlated
19 ZNF175 4 94.0 Moderately correlated
20 ZNF584 3 99.0 Highly correlated
21 ZNF263 3 180.0 Weakly correlated
22 ZNF597 3 94.0 Moderately correlated
23 ZNF140 3 99.0 Highly correlated
24 ZNF133 3 99.0 Highly correlated
25 ZNF528 3 43.0 Weakly correlated
26 ZNF510 3 99.0 Highly correlated
27 ZNF441 3 43.0 Weakly correlated
28 ZNF589 2 28.9 Weakly correlated
29 ZNF563 2 28.9 Weakly correlated
30 ZNF610 2 28.9 Weakly correlated
31 ZNF554 2 99.0 Highly correlated
32 ZNF547 2 74.0 Weakly correlated
33 ZNF792 2 94.0 Moderately correlated
34 ZNF485 2 94.0 Moderately correlated
35 ZNF18 2 160.0 Weakly correlated
36 ZNF418 2 43.0 Weakly correlated
37 ZNF324 2 99.0 Highly correlated
38 ZKSCAN1 2 160.0 Weakly correlated
39 ZNF251 2 94.0 Moderately correlated
40 ZNF257 2 0.0 Weakly correlated
41 ZNF136 1 74.0 Weakly correlated
42 ZNF17 1 69.0 Weakly correlated
43 ZNF701 1 28.9 Weakly correlated
44 ZNF705B 1 28.9 Weakly correlated
45 ZNF705D 1 28.9 Weakly correlated
46 ZNF141 1 43.0 Weakly correlated
47 ZNF730 1 19.6 Weakly correlated
48 ZNF8 1 99.0 Highly correlated
49 ZNF780A 1 43.0 Weakly correlated
50 ZNF786 1 99.0 Highly correlated
51 ZFP57 1 87.0 Moderately correlated
52 ZNF808 1 19.6 Weakly correlated
53 ZNF823 1 43.0 Weakly correlated
54 RBAK 1 99.0 Highly correlated
55 ZNF182 1 99.0 Highly correlated
56 ZNF674 1 99.0 Highly correlated
57 ZNF641 1 99.0 Highly correlated
58 ZNF202 1 160.0 Weakly correlated
59 ZNF595 1 43.0 Weakly correlated
60 ZNF585B 1 99.0 Highly correlated
61 ZNF567 1 99.0 Highly correlated
62 ZNF284 1 43.0 Weakly correlated
63 ZNF287 1 99.0 Highly correlated
64 ZNF555 1 94.0 Moderately correlated
65 ZNF317 1 99.0 Highly correlated
66 ZNF429 1 28.9 Weakly correlated
67 ZNF440 1 28.9 Weakly correlated
68 ZNF490 1 43.0 Weakly correlated
69 ZNF486 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 7 87.0 Moderately correlated
2 ZNF101 3 43.0 Weakly correlated
3 ZNF680 3 28.9 Weakly correlated
4 ZNF140 3 99.0 Highly correlated
5 ZNF793 3 99.0 Highly correlated
6 ZNF264 3 99.0 Highly correlated
7 ZNF528 2 43.0 Weakly correlated
8 ZNF723 2 15.2 Weakly correlated
9 ZNF133 2 99.0 Highly correlated
10 ZNF823 1 43.0 Weakly correlated
11 ZFP37 1 99.0 Highly correlated
12 ZNF485 1 94.0 Moderately correlated
13 ZNF202 1 160.0 Weakly correlated
14 ZNF175 1 94.0 Moderately correlated
15 ZNF780A 1 43.0 Weakly correlated
16 ZNF589 1 28.9 Weakly correlated
17 ZNF567 1 99.0 Highly correlated
18 ZNF584 1 99.0 Highly correlated
19 ZNF197 1 99.0 Highly correlated
20 ZNF792 1 94.0 Moderately correlated
21 ZNF287 1 99.0 Highly correlated
22 ZNF440 1 28.9 Weakly correlated
23 ZNF766 1 43.0 Weakly correlated
24 ZNF641 1 99.0 Highly correlated
25 ZNF534 1 19.6 Weakly correlated
26 ZNF479 1 6.4 Weakly correlated
27 ZNF554 1 99.0 Highly correlated
28 ZNF257 1 0.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZIM3 87.0 Moderately correlated