ZRdb KZFP & Repeats
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LTR_LTR36

  • Name
    LTR36
  • Repbase
    LTR36
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000498
Description :

LTR36 is a putative LTR related to the MER4-int group. Specific toprimates.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtaaccgagtacccccatttttctaagagaaagagaatgagttttattatttttttttctcttttctccttttccccctgttccccacttcctacttagccctttagaaatgcaattataaccttttacctccccttcaccagacactccctacagggcaagttcatctaactatgtgcttagaagctccagagcggaactctcncccaccaggaggttgcctcgagagacaacagtcgatttacaacccaaagtatgcccgctacgaaactctctcccacctggagagtttcggccacctttacaacctagttctgcccacgaaggcgccagcggtcaccagctcgaccgcccggtagataaggcaccgaagcnagtacgcggacccccacctgctcgcttcctcccctgcgtgccattcatgccaagcccccttttaaaagcgcccgctttctgctccaaaagcgaagcggtacccttaaggcaggaagcctgtacttcttcccctaagctagctttggaataaaaagtcactttctttataccagacctcgctcttgttaattggactctgcaagcggcgagcgactgaacctgcgtttcggttaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 35 99.0 Weakly correlated
2 ZNF766 24 43.0 Weakly correlated
3 ZNF534 14 19.6 Weakly correlated
4 ZKSCAN1 13 160.0 Weakly correlated
5 ZNF175 13 94.0 Weakly correlated
6 ZNF589 12 28.9 Weakly correlated
7 ZNF197 11 99.0 Weakly correlated
8 ZNF394 11 99.0 Weakly correlated
9 ZNF263 9 180.0 Weakly correlated
10 ZNF584 9 99.0 Weakly correlated
11 ZFP37 8 99.0 Weakly correlated
12 ZNF2 8 99.0 Weakly correlated
13 ZKSCAN8 8 160.0 Weakly correlated
14 ZNF490 7 43.0 Weakly correlated
15 ZNF18 6 160.0 Weakly correlated
16 ZNF680 6 28.9 Weakly correlated
17 ZNF317 5 99.0 Weakly correlated
18 ZNF274 4 99.0 Weakly correlated
19 ZIM3 4 87.0 Weakly correlated
20 ZNF701 4 28.9 Weakly correlated
21 ZNF75D 4 94.0 Weakly correlated
22 ZNF28 3 28.9 Weakly correlated
23 ZNF257 3 0.0 Weakly correlated
24 ZFP69B 3 99.0 Weakly correlated
25 ZNF324 3 99.0 Weakly correlated
26 ZNF679 3 28.9 Weakly correlated
27 ZNF610 2 28.9 Weakly correlated
28 ZNF674 2 99.0 Weakly correlated
29 ZNF558 2 99.0 Weakly correlated
30 ZNF547 2 74.0 Highly correlated
31 ZNF528 2 43.0 Weakly correlated
32 ZNF510 2 99.0 Weakly correlated
33 ZNF479 2 6.4 Weakly correlated
34 ZNF41 2 99.0 Weakly correlated
35 ZNF33A 2 99.0 Weakly correlated
36 ZNF320 2 28.9 Weakly correlated
37 ZNF723 1 15.2 Weakly correlated
38 ZNF786 1 99.0 Weakly correlated
39 ZNF705B 1 28.9 Weakly correlated
40 ZNF682 1 28.9 Weakly correlated
41 ZNF799 1 43.0 Weakly correlated
42 ZNF695 1 28.9 Weakly correlated
43 ZNF597 1 94.0 Weakly correlated
44 ZNF585A 1 99.0 Weakly correlated
45 ZNF554 1 99.0 Weakly correlated
46 ZNF486 1 8.6 Weakly correlated
47 ZNF350 1 99.0 Weakly correlated
48 ZNF273 1 28.9 Weakly correlated
49 ZNF251 1 94.0 Weakly correlated
50 ZNF17 1 69.0 Moderately correlated
51 ZNF160 1 74.0 Highly correlated
52 ZNF140 1 99.0 Weakly correlated
53 ZNF101 1 43.0 Weakly correlated
54 ZKSCAN5 1 160.0 Weakly correlated
55 ZFP57 1 87.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF534 7 19.6 Weakly correlated
2 ZNF584 4 99.0 Weakly correlated
3 ZNF197 4 99.0 Weakly correlated
4 ZNF263 4 180.0 Weakly correlated
5 ZNF589 4 28.9 Weakly correlated
6 ZNF175 4 94.0 Weakly correlated
7 ZNF490 3 43.0 Weakly correlated
8 ZIM3 2 87.0 Weakly correlated
9 ZNF75D 2 94.0 Weakly correlated
10 ZNF317 2 99.0 Weakly correlated
11 ZNF679 2 28.9 Weakly correlated
12 ZNF28 1 28.9 Weakly correlated
13 ZNF2 1 99.0 Weakly correlated
14 ZNF674 1 99.0 Weakly correlated
15 ZNF257 1 0.0 Weakly correlated
16 ZNF320 1 28.9 Weakly correlated
17 ZNF554 1 99.0 Weakly correlated
18 ZNF140 1 99.0 Weakly correlated
19 ZKSCAN5 1 160.0 Weakly correlated
20 ZNF510 1 99.0 Weakly correlated
21 ZKSCAN1 1 160.0 Weakly correlated
22 ZNF528 1 43.0 Weakly correlated
23 ZNF350 1 99.0 Weakly correlated
24 ZFP57 1 87.0 Weakly correlated
25 ZNF701 1 28.9 Weakly correlated
26 ZNF766 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF534 19.6 Weakly correlated