ZRdb KZFP & Repeats
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LTR_LTR35A

  • Name
    LTR35A
  • Repbase
    LTR35A
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000496
Description :

A somewhat younger subfamily of LTR35.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgagacagagtagggacggggcttggcttcagctcacccccactagagcattctttcatgcattcccactgatcacaaaacccacaccactacctcactgacgccataatgtttaaccatgccttttacttaaagaattccaggaactggccttaggagataaccaaggttgcggagtgtcccacctcgggaaggaatgctgaacaattgatttacagccttgttgccgccggccagaccaccaggtggcccattactcaagataaccatcgcaaccagataatgctgacctgcataccctacccctcacgtgctttgcccagcccagcctgcataccctacccctgatgtcaattcccgcgctttgcctaataaaaaagccctaccggctcttttcggggagtcagtcagggaattctctctctctctcgtgctgcctcccttatgcccgggcataagctccaatgaagccttgtctgggaaaactcttttggcctcatgtcaatttctattgcattgagagcccaagaacccgtggtcggtaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 16 99.0 Weakly correlated
2 ZNF2 12 99.0 Weakly correlated
3 ZKSCAN1 12 160.0 Weakly correlated
4 ZNF766 9 43.0 Highly correlated
5 ZNF680 8 28.9 Moderately correlated
6 ZNF175 7 94.0 Weakly correlated
7 ZNF589 7 28.9 Moderately correlated
8 ZFP37 6 99.0 Weakly correlated
9 ZNF394 6 99.0 Weakly correlated
10 ZNF197 6 99.0 Weakly correlated
11 ZNF534 5 19.6 Weakly correlated
12 ZNF558 5 99.0 Weakly correlated
13 ZFP69B 5 99.0 Weakly correlated
14 ZIM3 5 87.0 Weakly correlated
15 ZNF18 5 160.0 Weakly correlated
16 ZNF263 4 180.0 Weakly correlated
17 ZNF610 4 28.9 Moderately correlated
18 ZNF324 4 99.0 Weakly correlated
19 ZNF584 4 99.0 Weakly correlated
20 ZNF101 4 43.0 Highly correlated
21 ZKSCAN8 4 160.0 Weakly correlated
22 ZNF705B 4 28.9 Moderately correlated
23 ZNF701 3 28.9 Moderately correlated
24 ZNF596 3 94.0 Weakly correlated
25 ZNF641 3 99.0 Weakly correlated
26 ZNF585B 2 99.0 Weakly correlated
27 ZNF554 2 99.0 Weakly correlated
28 ZNF549 2 87.0 Weakly correlated
29 ZNF440 2 28.9 Moderately correlated
30 ZNF705D 2 28.9 Moderately correlated
31 ZFP57 2 87.0 Weakly correlated
32 ZNF317 2 99.0 Weakly correlated
33 ZNF792 2 94.0 Weakly correlated
34 ZNF202 2 160.0 Weakly correlated
35 ZNF723 1 15.2 Weakly correlated
36 ZNF75A 1 94.0 Weakly correlated
37 ZNF778 1 74.0 Weakly correlated
38 ZNF823 1 43.0 Highly correlated
39 ZNF8 1 99.0 Weakly correlated
40 ZNF695 1 28.9 Moderately correlated
41 ZNF91 1 6.0 Weakly correlated
42 ZNF611 1 19.6 Weakly correlated
43 ZNF597 1 94.0 Weakly correlated
44 ZNF506 1 28.9 Moderately correlated
45 ZNF490 1 43.0 Highly correlated
46 ZNF486 1 8.6 Weakly correlated
47 ZNF44 1 43.0 Highly correlated
48 ZNF350 1 99.0 Weakly correlated
49 ZNF320 1 28.9 Moderately correlated
50 ZNF284 1 43.0 Highly correlated
51 ZNF264 1 99.0 Weakly correlated
52 ZNF222 1 43.0 Highly correlated
53 ZKSCAN5 1 160.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF2 4 99.0 Weakly correlated
2 ZNF596 3 94.0 Weakly correlated
3 ZNF534 3 19.6 Weakly correlated
4 ZNF440 2 28.9 Moderately correlated
5 ZNF705D 2 28.9 Moderately correlated
6 ZNF680 2 28.9 Moderately correlated
7 ZFP57 1 87.0 Weakly correlated
8 ZIM3 1 87.0 Weakly correlated
9 ZKSCAN5 1 160.0 Weakly correlated
10 ZNF324 1 99.0 Weakly correlated
11 ZNF549 1 87.0 Weakly correlated
12 ZNF705B 1 28.9 Moderately correlated
13 ZNF382 1 99.0 Weakly correlated
14 ZNF610 1 28.9 Moderately correlated
15 ZNF701 1 28.9 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats