ZRdb KZFP & Repeats
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LTR_LTR35

  • Name
    LTR35
  • Repbase
    LTR35
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000495
Description :

LTR35 is a LTR from LTR-retrotransposon related to theMER4/MER57/MER41-int group.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgagacagaataggagtgggacgcggctcctccttcacgtatttttttcttttctttcccactgatcacaaaacccacaccactacctcgctgacgctatacccgctaaccccgaggctttagtcatacaaagaaaatagccattcttctgtgctctcataatgtttaaccatgccttttacttaaagaattccaggaactggccttaggagatccaaatatcgaaccaaggttgcggagtgtcccacctcgggaaggaatgctgaacaattgatttacagccttgttgccgccggccagaccaccaggtggcccattactcaagataaccatcgcaaccagatatgctgacctgcataccctacccctcacgtgctttgcccagcccagcctgcataccctacccctgatgtcaattcccgcgctttgcctaataaaaaaatccctaccggctcttttcggggagccagccggaggatccttgcgcctccgctgtctcccttgcgctcgagcacaagccccgaaataaaagccttgtctgggaaatctgcttggccccgtgttaatttccattacatggggagccnaagagcctgtggtctgtaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 11 99.0 Weakly correlated
2 ZKSCAN1 5 160.0 Weakly correlated
3 ZNF2 5 99.0 Weakly correlated
4 ZNF169 4 94.0 Weakly correlated
5 ZFP37 4 99.0 Weakly correlated
6 ZNF766 4 43.0 Highly correlated
7 ZNF554 3 99.0 Weakly correlated
8 ZNF440 3 28.9 Moderately correlated
9 ZNF394 3 99.0 Weakly correlated
10 ZIM3 2 87.0 Weakly correlated
11 ZNF679 2 28.9 Moderately correlated
12 ZNF584 2 99.0 Weakly correlated
13 ZNF558 2 99.0 Weakly correlated
14 ZNF75D 2 94.0 Weakly correlated
15 ZNF197 2 99.0 Weakly correlated
16 ZNF175 2 94.0 Weakly correlated
17 ZNF707 1 74.0 Weakly correlated
18 ZNF705D 1 28.9 Moderately correlated
19 ZNF778 1 74.0 Weakly correlated
20 ZNF823 1 43.0 Highly correlated
21 ZNF705B 1 28.9 Moderately correlated
22 ZNF84 1 99.0 Weakly correlated
23 ZNF701 1 28.9 Moderately correlated
24 ZNF92 1 28.9 Moderately correlated
25 ZNF610 1 28.9 Moderately correlated
26 ZNF597 1 94.0 Weakly correlated
27 ZNF589 1 28.9 Moderately correlated
28 ZNF567 1 99.0 Weakly correlated
29 ZNF543 1 99.0 Weakly correlated
30 ZNF343 1 74.0 Weakly correlated
31 ZNF320 1 28.9 Moderately correlated
32 ZNF317 1 99.0 Weakly correlated
33 ZNF28 1 28.9 Moderately correlated
34 ZNF282 1 319.0 Weakly correlated
35 ZNF273 1 28.9 Moderately correlated
36 ZNF263 1 180.0 Weakly correlated
37 ZNF257 1 0.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF169 3 94.0 Weakly correlated
2 ZIM3 2 87.0 Weakly correlated
3 ZNF2 2 99.0 Weakly correlated
4 ZNF440 2 28.9 Moderately correlated
5 ZNF175 1 94.0 Weakly correlated
6 ZNF679 1 28.9 Moderately correlated
7 ZNF707 1 74.0 Weakly correlated
8 ZNF84 1 99.0 Weakly correlated
9 ZNF382 1 99.0 Weakly correlated
10 ZNF558 1 99.0 Weakly correlated
11 ZNF823 1 43.0 Highly correlated
12 ZNF320 1 28.9 Moderately correlated
13 ZNF75D 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats