ZRdb KZFP & Repeats
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LTR_LTR34

  • Name
    LTR34
  • Repbase
    LTR34
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000494
Description :

LTR34 is a putative LTR from the MER4-int group. 4 TSDs.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtaaaggaaaataaaaaatctcaggacccccaaactccttaaactccttangcccggaggctgagtcattgcaacaccctcttccaaatgaatagctgttactagcattatgcatcagccagatccccacggaaaggtaaaaggcctcaggcatctgcgaaggactgcccccacagatcattcataagtaaattctttgctggcctcccataaacaaggacatgccaattgtaactttaggtctgcaatctaagtctagctcctaaaactaaagtctgttcgattccacactgataatgtcgattacaagcttatcttcccaggtgcagaacaaagacaagatgagatcagtcatttcctccacctacccagagacgtctgcataattgactcttcctttactccctttttctcttcaaacgttcaccttatcttatgtaaaatgtagatttactgggcactaactaaagtctcacaggaatgtaanccattcgccttaccgcctacctgcccctcttcctacatgccttcccccnctttaaggaaatgtataaatactaaacctcctgaaaacctcttcggaaaaancagccacagatgtgtctgtggctcgtgtttttcccggacgcgccctaaagctggcttaataaacctcgattgattgagacttttgcctcagtcactcatttcggttgtca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 57 99.0 Weakly correlated
2 ZNF766 27 43.0 Weakly correlated
3 ZNF589 5 28.9 Weakly correlated
4 ZNF175 5 94.0 Weakly correlated
5 ZNF18 5 160.0 Weakly correlated
6 ZNF263 4 180.0 Weakly correlated
7 ZNF680 4 28.9 Weakly correlated
8 ZKSCAN8 3 160.0 Weakly correlated
9 ZNF679 3 28.9 Weakly correlated
10 ZNF257 3 0.0 Weakly correlated
11 ZNF2 3 99.0 Weakly correlated
12 ZNF558 2 99.0 Weakly correlated
13 ZNF479 2 6.4 Weakly correlated
14 ZNF394 2 99.0 Weakly correlated
15 ZFP37 2 99.0 Weakly correlated
16 ZNF251 2 94.0 Weakly correlated
17 ZNF701 2 28.9 Weakly correlated
18 ZKSCAN1 2 160.0 Weakly correlated
19 ZNF723 1 15.2 Weakly correlated
20 ZNF808 1 19.6 Weakly correlated
21 ZNF92 1 28.9 Weakly correlated
22 ZNF584 1 99.0 Weakly correlated
23 ZNF320 1 28.9 Weakly correlated
24 ZNF568 1 99.0 Weakly correlated
25 ZNF549 1 87.0 Weakly correlated
26 ZNF528 1 43.0 Weakly correlated
27 ZNF317 1 99.0 Weakly correlated
28 ZNF274 1 99.0 Weakly correlated
29 ZNF182 1 99.0 Weakly correlated
30 ZNF140 1 99.0 Weakly correlated
31 ZNF101 1 43.0 Weakly correlated
32 ZIM3 1 87.0 Weakly correlated
33 ZFP69B 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 10 43.0 Weakly correlated
2 ZNF382 8 99.0 Weakly correlated
3 ZNF257 3 0.0 Weakly correlated
4 ZNF263 2 180.0 Weakly correlated
5 ZNF589 2 28.9 Weakly correlated
6 ZFP37 1 99.0 Weakly correlated
7 ZKSCAN1 1 160.0 Weakly correlated
8 ZNF175 1 94.0 Weakly correlated
9 ZNF549 1 87.0 Weakly correlated
10 ZNF723 1 15.2 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats