ZRdb KZFP & Repeats
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LTR_LTR33C

  • Name
    LTR33C
  • Repbase
    LTR33C
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000493
Description :

Found at orthologous sites in all eutherians, seemingly absent frommarsupials.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggtggntttgtactgtgtcaacttggctaagctgggaactacgtttcccagaatccccttccctgtatggttccgggttagagttggccaaaagaggaatttgcgcgagatttggaaggcggaagtgaagcagcagccattactctctgaaggtcgtcgtggttagatgcggtganagacagacgcagaggtgccggcgggttccagcttgtcctcgctctcctccgctccgcgtccagctcttcttcccgactgctggccctgctgaccaacagcggccccaggcccaccaccagacgcttggctgcggacccacagaggcggtagctacgcagaggcaacagccttccatagacttctccaccagctcccccttcgcggtcccacttcggcagctggacgtgcctggcttctcagatttccctgcaagctccgacttgtccacccgcgccagtgcttcaggagggctggttagtgacttttctctgatcctccaactcccccttccggaccttcacttccccagctcctcccacaattgtgtaaggtctaattcctataataaatcccttattccataatactcatagtggttctgcttccctgactgaaccctgactgataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 32 99.0 Highly correlated
2 ZNF766 21 43.0 Weakly correlated
3 ZNF680 14 28.9 Weakly correlated
4 ZNF589 12 28.9 Weakly correlated
5 ZNF175 11 94.0 Moderately correlated
6 ZNF263 11 180.0 Weakly correlated
7 ZKSCAN1 9 160.0 Weakly correlated
8 ZNF679 9 28.9 Weakly correlated
9 ZNF394 8 99.0 Highly correlated
10 ZNF75D 8 94.0 Moderately correlated
11 ZNF723 7 15.2 Weakly correlated
12 ZNF257 7 0.0 Weakly correlated
13 ZNF317 6 99.0 Highly correlated
14 ZFP69B 6 99.0 Highly correlated
15 ZIM3 6 87.0 Moderately correlated
16 ZNF485 5 94.0 Moderately correlated
17 ZNF197 5 99.0 Highly correlated
18 ZNF18 5 160.0 Weakly correlated
19 ZNF547 5 74.0 Weakly correlated
20 ZNF584 4 99.0 Highly correlated
21 ZNF554 4 99.0 Highly correlated
22 ZFP37 4 99.0 Highly correlated
23 ZNF2 4 99.0 Highly correlated
24 ZNF705B 4 28.9 Weakly correlated
25 ZKSCAN8 4 160.0 Weakly correlated
26 ZNF605 3 99.0 Highly correlated
27 ZNF597 3 94.0 Moderately correlated
28 ZNF610 3 28.9 Weakly correlated
29 ZNF684 3 99.0 Highly correlated
30 ZNF701 3 28.9 Weakly correlated
31 ZNF793 3 99.0 Highly correlated
32 ZNF479 3 6.4 Weakly correlated
33 ZNF471 3 94.0 Moderately correlated
34 ZNF324 3 99.0 Highly correlated
35 ZNF274 2 99.0 Highly correlated
36 ZNF91 2 6.0 Weakly correlated
37 ZFP28 2 99.0 Highly correlated
38 ZNF483 2 99.0 Highly correlated
39 ZNF169 2 94.0 Moderately correlated
40 ZNF506 2 28.9 Weakly correlated
41 ZNF808 2 19.6 Weakly correlated
42 ZNF141 2 43.0 Weakly correlated
43 ZNF705D 2 28.9 Weakly correlated
44 ZNF558 2 99.0 Highly correlated
45 ZNF563 2 28.9 Weakly correlated
46 ZNF101 2 43.0 Weakly correlated
47 ZNF780A 1 43.0 Weakly correlated
48 ZNF222 1 43.0 Weakly correlated
49 ZNF133 1 99.0 Highly correlated
50 ZKSCAN5 1 160.0 Weakly correlated
51 ZNF287 1 99.0 Highly correlated
52 ZNF792 1 94.0 Moderately correlated
53 ZFP57 1 87.0 Moderately correlated
54 ZNF816 1 28.9 Weakly correlated
55 ZNF85 1 28.9 Weakly correlated
56 ZNF93 1 8.6 Weakly correlated
57 ZNF251 1 94.0 Moderately correlated
58 ZNF641 1 99.0 Highly correlated
59 ZNF282 1 319.0 Weakly correlated
60 ZNF441 1 43.0 Weakly correlated
61 ZNF320 1 28.9 Weakly correlated
62 ZNF585A 1 99.0 Highly correlated
63 ZNF331 1 94.0 Moderately correlated
64 ZNF334 1 99.0 Highly correlated
65 ZNF337 1 43.0 Weakly correlated
66 ZNF534 1 19.6 Weakly correlated
67 ZNF528 1 43.0 Weakly correlated
68 ZNF519 1 19.6 Weakly correlated
69 ZNF490 1 43.0 Weakly correlated
70 ZNF425 1 94.0 Moderately correlated
71 ZNF440 1 28.9 Weakly correlated
72 ZNF468 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF75D 5 94.0 Moderately correlated
2 ZNF680 4 28.9 Weakly correlated
3 ZNF485 4 94.0 Moderately correlated
4 ZNF793 3 99.0 Highly correlated
5 ZNF382 3 99.0 Highly correlated
6 ZIM3 2 87.0 Moderately correlated
7 ZNF257 2 0.0 Weakly correlated
8 ZNF2 2 99.0 Highly correlated
9 ZFP69B 2 99.0 Highly correlated
10 ZNF263 1 180.0 Weakly correlated
11 ZNF282 1 319.0 Weakly correlated
12 ZNF197 1 99.0 Highly correlated
13 ZNF479 1 6.4 Weakly correlated
14 ZNF287 1 99.0 Highly correlated
15 ZKSCAN1 1 160.0 Weakly correlated
16 ZNF589 1 28.9 Weakly correlated
17 ZKSCAN5 1 160.0 Weakly correlated
18 ZNF684 1 99.0 Highly correlated
19 ZNF141 1 43.0 Weakly correlated
20 ZNF766 1 43.0 Weakly correlated
21 ZNF816 1 28.9 Weakly correlated
22 ZNF471 1 94.0 Moderately correlated
23 ZNF597 1 94.0 Moderately correlated
24 ZNF483 1 99.0 Highly correlated
25 ZNF701 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats