ZRdb KZFP & Repeats
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LTR_LTR33B

  • Name
    LTR33B
  • Repbase
    LTR33B
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000492
Description :

Found at orthologous sites in all eutherians, seemingly absent frommarsupials.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgccggattgtctgttgncaactcagcaccatccccgctcccttctangctctcccctgtatcgcaggggctggaagcctggaaactacatttcccagantcccttgccagcagggttccggnttagattctgccaatgagaggcactcgcgcgagatttggaaggcggaagagaaggagaagccattattctccngcggcagcngcgggcagacgcgtgggcttcggcagacggcagatgtgaggttttgccagcggcttccgggcatcctcctgngaatcacccgcttcggtgctgcaggcagctgagatcatcggcggcggcttccctgcgattcctgcacttcctgatttcctgaaagctagcagcggtttccctgaccttcgctcccccagcccttccaacggttntgtaagcctctaattccctgtattaaatcccttcctgcttgaaatacctagagtggtttctgttttcctgaccgaaccctgactgataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 48 99.0 Highly correlated
2 ZNF766 25 43.0 Weakly correlated
3 ZNF317 22 99.0 Highly correlated
4 ZNF394 17 99.0 Highly correlated
5 ZIM3 17 87.0 Moderately correlated
6 ZNF431 17 28.9 Weakly correlated
7 ZNF263 15 180.0 Weakly correlated
8 ZNF479 13 6.4 Weakly correlated
9 ZNF679 12 28.9 Weakly correlated
10 ZNF175 11 94.0 Moderately correlated
11 ZNF891 11 99.0 Highly correlated
12 ZFP37 10 99.0 Highly correlated
13 ZNF18 9 160.0 Weakly correlated
14 ZNF589 9 28.9 Weakly correlated
15 ZNF2 8 99.0 Highly correlated
16 ZNF680 7 28.9 Weakly correlated
17 ZKSCAN8 7 160.0 Weakly correlated
18 ZNF584 6 99.0 Highly correlated
19 ZKSCAN1 6 160.0 Weakly correlated
20 ZNF33B 6 99.0 Highly correlated
21 ZNF528 6 43.0 Weakly correlated
22 ZNF75D 6 94.0 Moderately correlated
23 ZNF197 6 99.0 Highly correlated
24 ZNF723 5 15.2 Weakly correlated
25 ZNF793 4 99.0 Highly correlated
26 ZNF597 4 94.0 Moderately correlated
27 ZNF610 4 28.9 Weakly correlated
28 ZNF324 4 99.0 Highly correlated
29 ZNF534 3 19.6 Weakly correlated
30 ZNF93 3 8.6 Weakly correlated
31 ZNF92 3 28.9 Weakly correlated
32 ZNF264 3 99.0 Highly correlated
33 ZNF101 3 43.0 Weakly correlated
34 ZNF705B 2 28.9 Weakly correlated
35 ZNF705D 2 28.9 Weakly correlated
36 ZNF140 2 99.0 Highly correlated
37 ZNF133 2 99.0 Highly correlated
38 ZNF26 2 99.0 Highly correlated
39 ZNF257 2 0.0 Weakly correlated
40 ZNF506 2 28.9 Weakly correlated
41 ZNF490 2 43.0 Weakly correlated
42 ZNF486 2 8.6 Weakly correlated
43 ZNF485 2 94.0 Moderately correlated
44 ZNF28 2 28.9 Weakly correlated
45 ZNF701 2 28.9 Weakly correlated
46 ZNF441 2 43.0 Weakly correlated
47 ZNF343 2 74.0 Weakly correlated
48 ZNF684 2 99.0 Highly correlated
49 ZNF350 2 99.0 Highly correlated
50 ZNF157 1 99.0 Highly correlated
51 ZNF700 1 28.9 Weakly correlated
52 ZFP14 1 99.0 Highly correlated
53 ZNF707 1 74.0 Weakly correlated
54 ZNF141 1 43.0 Weakly correlated
55 ZNF778 1 74.0 Weakly correlated
56 ZNF780A 1 43.0 Weakly correlated
57 ZNF786 1 99.0 Highly correlated
58 ZNF12 1 99.0 Highly correlated
59 ZNF7 1 99.0 Highly correlated
60 ZNF823 1 43.0 Weakly correlated
61 ZNF8 1 99.0 Highly correlated
62 ZFP69B 1 99.0 Highly correlated
63 ZNF273 1 28.9 Weakly correlated
64 ZNF418 1 43.0 Weakly correlated
65 ZNF425 1 94.0 Moderately correlated
66 ZNF429 1 28.9 Weakly correlated
67 ZNF44 1 43.0 Weakly correlated
68 ZNF468 1 28.9 Weakly correlated
69 ZNF470 1 99.0 Highly correlated
70 ZNF483 1 99.0 Highly correlated
71 ZNF510 1 99.0 Highly correlated
72 ZNF274 1 99.0 Highly correlated
73 ZNF202 1 160.0 Weakly correlated
74 ZNF543 1 99.0 Highly correlated
75 ZNF549 1 87.0 Moderately correlated
76 ZNF554 1 99.0 Highly correlated
77 ZNF563 1 28.9 Weakly correlated
78 ZNF573 1 94.0 Moderately correlated
79 ZNF605 1 99.0 Highly correlated
80 ZNF251 1 94.0 Moderately correlated
81 ZNF611 1 19.6 Weakly correlated
82 ZNF671 1 94.0 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 6 87.0 Moderately correlated
2 ZNF528 5 43.0 Weakly correlated
3 ZNF33B 5 99.0 Highly correlated
4 ZNF479 5 6.4 Weakly correlated
5 ZNF263 3 180.0 Weakly correlated
6 ZNF317 3 99.0 Highly correlated
7 ZNF679 3 28.9 Weakly correlated
8 ZNF75D 3 94.0 Moderately correlated
9 ZNF723 2 15.2 Weakly correlated
10 ZNF766 2 43.0 Weakly correlated
11 ZNF26 2 99.0 Highly correlated
12 ZNF343 2 74.0 Weakly correlated
13 ZNF680 2 28.9 Weakly correlated
14 ZNF506 1 28.9 Weakly correlated
15 ZNF597 1 94.0 Moderately correlated
16 ZNF701 1 28.9 Weakly correlated
17 ZNF610 1 28.9 Weakly correlated
18 ZNF44 1 43.0 Weakly correlated
19 ZNF483 1 99.0 Highly correlated
20 ZNF780A 1 43.0 Weakly correlated
21 ZNF431 1 28.9 Weakly correlated
22 ZNF793 1 99.0 Highly correlated
23 ZNF28 1 28.9 Weakly correlated
24 ZNF7 1 99.0 Highly correlated
25 ZFP14 1 99.0 Highly correlated
26 ZNF18 1 160.0 Weakly correlated
27 ZNF671 1 94.0 Moderately correlated
28 ZNF273 1 28.9 Weakly correlated
29 ZNF707 1 74.0 Weakly correlated
30 ZNF490 1 43.0 Weakly correlated
31 ZNF133 1 99.0 Highly correlated
32 ZFP37 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats