ZRdb KZFP & Repeats
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LTR_LTR33A

  • Name
    LTR33A
  • Repbase
    LTR33A
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000490
Description :

Found at orthologous sites in all eutherians, seemingly absent frommarsupials.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgccggtcatttgcctgtttgctctcagatccattccccgcccttcccctgctctgctctgtatcgcagggaactacatttcccaggctcccttgccnnctggcttccggntaggttcggccaatgggaggcactggcgggagactggagggcgggaggaagggagaagccagggtatttctccccctccctctctgcttcgggcggcgtctccggcagtggctgcgtctcctccgtggctccagctcccgccgggcagcccctccctccgtggttccagctcccgccgggcggccccggctcctgggctctggtaacaccacctcctccctttgtccctccagccctaggggtggtagcggcttcctgctgttgctaatctctgggttgcctcaccgtcccctgtttggcttctcagctcttccancacctgtgtaaccaattccctgtattaaattccctctgtttgaaatacctagagtggtttctgttttcctgactggaccctgactgataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 75 99.0 Highly correlated
2 ZNF263 48 180.0 Weakly correlated
3 ZNF394 36 99.0 Highly correlated
4 ZIM3 31 87.0 Moderately correlated
5 ZNF766 30 43.0 Weakly correlated
6 ZNF680 23 28.9 Weakly correlated
7 ZNF573 19 94.0 Moderately correlated
8 ZFP37 18 99.0 Highly correlated
9 ZNF589 17 28.9 Weakly correlated
10 ZNF317 17 99.0 Highly correlated
11 ZNF479 15 6.4 Weakly correlated
12 ZNF534 14 19.6 Weakly correlated
13 ZNF705B 14 28.9 Weakly correlated
14 ZNF679 13 28.9 Weakly correlated
15 ZNF175 12 94.0 Moderately correlated
16 ZNF282 11 319.0 Weakly correlated
17 ZNF701 11 28.9 Weakly correlated
18 ZKSCAN1 11 160.0 Weakly correlated
19 ZNF2 10 99.0 Highly correlated
20 ZKSCAN8 9 160.0 Weakly correlated
21 ZNF584 9 99.0 Highly correlated
22 ZNF274 9 99.0 Highly correlated
23 ZNF705D 9 28.9 Weakly correlated
24 ZNF320 8 28.9 Weakly correlated
25 ZNF554 8 99.0 Highly correlated
26 ZNF793 8 99.0 Highly correlated
27 ZNF324 8 99.0 Highly correlated
28 ZNF101 8 43.0 Weakly correlated
29 ZFP69B 8 99.0 Highly correlated
30 ZNF257 8 0.0 Weakly correlated
31 ZNF610 7 28.9 Weakly correlated
32 ZNF823 7 43.0 Weakly correlated
33 ZNF75D 7 94.0 Moderately correlated
34 ZNF197 6 99.0 Highly correlated
35 ZNF558 5 99.0 Highly correlated
36 ZNF528 4 43.0 Weakly correlated
37 ZNF597 4 94.0 Moderately correlated
38 ZNF169 4 94.0 Moderately correlated
39 ZNF682 4 28.9 Weakly correlated
40 ZNF251 4 94.0 Moderately correlated
41 ZNF707 3 74.0 Weakly correlated
42 ZNF485 3 94.0 Moderately correlated
43 ZNF506 3 28.9 Weakly correlated
44 ZNF486 3 8.6 Weakly correlated
45 ZNF723 3 15.2 Weakly correlated
46 ZNF519 3 19.6 Weakly correlated
47 ZNF18 3 160.0 Weakly correlated
48 ZNF549 2 87.0 Moderately correlated
49 ZNF425 2 94.0 Moderately correlated
50 ZNF561 2 43.0 Weakly correlated
51 ZFP28 2 99.0 Highly correlated
52 ZNF133 2 99.0 Highly correlated
53 ZNF140 2 99.0 Highly correlated
54 ZNF28 2 28.9 Weakly correlated
55 ZNF92 1 28.9 Weakly correlated
56 ZFP14 1 99.0 Highly correlated
57 ZNF789 1 99.0 Highly correlated
58 ZNF879 1 99.0 Highly correlated
59 ZNF765 1 8.6 Weakly correlated
60 ZNF8 1 99.0 Highly correlated
61 ZNF75A 1 94.0 Moderately correlated
62 ZNF626 1 0.0 Weakly correlated
63 ZNF605 1 99.0 Highly correlated
64 ZNF547 1 74.0 Weakly correlated
65 ZNF468 1 28.9 Weakly correlated
66 ZNF440 1 28.9 Weakly correlated
67 ZNF429 1 28.9 Weakly correlated
68 ZNF418 1 43.0 Weakly correlated
69 ZNF347 1 43.0 Weakly correlated
70 ZNF33B 1 99.0 Highly correlated
71 ZNF334 1 99.0 Highly correlated
72 ZNF202 1 160.0 Weakly correlated
73 ZNF141 1 43.0 Weakly correlated
74 ZKSCAN5 1 160.0 Weakly correlated
75 ZFP30 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 18 87.0 Moderately correlated
2 ZNF573 17 94.0 Moderately correlated
3 ZNF263 15 180.0 Weakly correlated
4 ZNF257 7 0.0 Weakly correlated
5 ZNF534 6 19.6 Weakly correlated
6 ZNF479 5 6.4 Weakly correlated
7 ZNF282 5 319.0 Weakly correlated
8 ZNF320 4 28.9 Weakly correlated
9 ZNF793 3 99.0 Highly correlated
10 ZNF382 3 99.0 Highly correlated
11 ZNF75D 3 94.0 Moderately correlated
12 ZNF485 3 94.0 Moderately correlated
13 ZNF679 3 28.9 Weakly correlated
14 ZNF597 3 94.0 Moderately correlated
15 ZNF589 3 28.9 Weakly correlated
16 ZNF701 2 28.9 Weakly correlated
17 ZNF317 2 99.0 Highly correlated
18 ZNF528 2 43.0 Weakly correlated
19 ZNF197 2 99.0 Highly correlated
20 ZNF680 2 28.9 Weakly correlated
21 ZNF823 2 43.0 Weakly correlated
22 ZNF175 2 94.0 Moderately correlated
23 ZNF705D 2 28.9 Weakly correlated
24 ZNF558 1 99.0 Highly correlated
25 ZNF274 1 99.0 Highly correlated
26 ZNF554 1 99.0 Highly correlated
27 ZNF705B 1 28.9 Weakly correlated
28 ZNF789 1 99.0 Highly correlated
29 ZNF28 1 28.9 Weakly correlated
30 ZNF2 1 99.0 Highly correlated
31 ZNF549 1 87.0 Moderately correlated
32 ZNF440 1 28.9 Weakly correlated
33 ZNF429 1 28.9 Weakly correlated
34 ZFP14 1 99.0 Highly correlated
35 ZNF33B 1 99.0 Highly correlated
36 ZNF766 1 43.0 Weakly correlated
37 ZNF682 1 28.9 Weakly correlated
38 ZNF506 1 28.9 Weakly correlated
39 ZNF169 1 94.0 Moderately correlated
40 ZNF101 1 43.0 Weakly correlated
41 ZKSCAN5 1 160.0 Weakly correlated
42 ZFP69B 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZIM3 87.0 Moderately correlated
2 ZNF257 0.0 Weakly correlated
3 ZNF263 180.0 Weakly correlated
4 ZNF573 94.0 Moderately correlated