ZRdb KZFP & Repeats
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LTR_LTR33

  • Name
    LTR33
  • Repbase
    LTR33
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000489
Description :

LTR33 is a putative LTR of an endogenous foamy virus, as it flanks aninternal sequence closely related to HERVL and MERVL. 6 bp TSDs.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgctggatattttccgtttgcccctccagatccactctccacccttctccaccctgctctgtgccccgggaggctgacctctatggactgcatcaacgggctcccttgccctctggcttccggttgggttcggccaatgggaggcaccggcaggagatcggagggcgggaggagagtgaggtcggggtatttattcccccggctccctccctgccgggccgcggnttggcagtggctgcgttcctctaccgaaggccacagctcctgtcgggcggccctctcctacagctacagctctctccgggttccggtaaccgctccctccccttgccccttcaggcctaggggtggtaacggctccccgctgttgctagccccggggtgcttcaccatcccttgttggtttcccttaaccctgcccacacctttgtaaatagtcccttcattaaactctcctcaattacccccgtttgagtgtgccatctgtttcctgccgggaccctgactgataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 408 99.0 Highly correlated
2 ZNF263 287 180.0 Weakly correlated
3 ZNF766 161 43.0 Weakly correlated
4 ZIM3 120 87.0 Moderately correlated
5 ZNF680 108 28.9 Weakly correlated
6 ZNF534 106 19.6 Weakly correlated
7 ZNF394 98 99.0 Highly correlated
8 ZNF679 82 28.9 Weakly correlated
9 ZNF175 80 94.0 Moderately correlated
10 ZNF705B 80 28.9 Weakly correlated
11 ZNF317 71 99.0 Highly correlated
12 ZNF589 69 28.9 Weakly correlated
13 ZFP37 64 99.0 Highly correlated
14 ZNF479 56 6.4 Weakly correlated
15 ZNF705D 54 28.9 Weakly correlated
16 ZNF584 52 99.0 Highly correlated
17 ZNF2 50 99.0 Highly correlated
18 ZKSCAN1 46 160.0 Weakly correlated
19 ZNF257 44 0.0 Weakly correlated
20 ZNF18 43 160.0 Weakly correlated
21 ZKSCAN8 42 160.0 Weakly correlated
22 ZFP69B 40 99.0 Highly correlated
23 ZNF320 40 28.9 Weakly correlated
24 ZNF701 40 28.9 Weakly correlated
25 ZNF723 37 15.2 Weakly correlated
26 ZNF554 34 99.0 Highly correlated
27 ZNF793 32 99.0 Highly correlated
28 ZNF528 31 43.0 Weakly correlated
29 ZNF324 29 99.0 Highly correlated
30 ZNF197 28 99.0 Highly correlated
31 ZNF75D 28 94.0 Moderately correlated
32 ZNF101 26 43.0 Weakly correlated
33 ZNF274 21 99.0 Highly correlated
34 ZNF558 20 99.0 Highly correlated
35 ZNF251 19 94.0 Moderately correlated
36 ZNF610 19 28.9 Weakly correlated
37 ZNF823 19 43.0 Weakly correlated
38 ZNF282 18 319.0 Weakly correlated
39 ZNF490 18 43.0 Weakly correlated
40 ZNF790 18 99.0 Highly correlated
41 ZNF92 18 28.9 Weakly correlated
42 ZNF28 16 28.9 Weakly correlated
43 ZNF563 14 28.9 Weakly correlated
44 ZNF597 14 94.0 Moderately correlated
45 ZNF429 12 28.9 Weakly correlated
46 ZNF585A 12 99.0 Highly correlated
47 ZNF735 12 28.9 Weakly correlated
48 ZNF519 11 19.6 Weakly correlated
49 ZNF549 11 87.0 Moderately correlated
50 ZNF707 10 74.0 Weakly correlated
51 ZNF425 9 94.0 Moderately correlated
52 ZNF506 9 28.9 Weakly correlated
53 ZNF778 9 74.0 Weakly correlated
54 ZFP57 8 87.0 Moderately correlated
55 ZNF141 8 43.0 Weakly correlated
56 ZNF585B 8 99.0 Highly correlated
57 ZNF273 7 28.9 Weakly correlated
58 ZNF468 7 28.9 Weakly correlated
59 ZNF486 7 8.6 Weakly correlated
60 ZNF682 7 28.9 Weakly correlated
61 ZNF695 7 28.9 Weakly correlated
62 ZNF808 7 19.6 Weakly correlated
63 ZKSCAN5 6 160.0 Weakly correlated
64 ZNF140 6 99.0 Highly correlated
65 ZNF169 6 94.0 Moderately correlated
66 ZNF331 6 94.0 Moderately correlated
67 ZNF37A 6 99.0 Highly correlated
68 ZNF483 6 99.0 Highly correlated
69 ZNF485 6 94.0 Moderately correlated
70 ZNF573 6 94.0 Moderately correlated
71 ZNF100 5 28.9 Weakly correlated
72 ZNF182 5 99.0 Highly correlated
73 ZNF264 5 99.0 Highly correlated
74 ZNF33A 5 99.0 Highly correlated
75 ZNF350 5 99.0 Highly correlated
76 ZNF547 5 74.0 Weakly correlated
77 ZNF133 4 99.0 Highly correlated
78 ZNF334 4 99.0 Highly correlated
79 ZNF436 4 180.0 Weakly correlated
80 ZNF441 4 43.0 Weakly correlated
81 ZNF471 4 94.0 Moderately correlated
82 ZNF641 4 99.0 Highly correlated
83 ZNF684 4 99.0 Highly correlated
84 ZNF730 4 19.6 Weakly correlated
85 ZNF792 4 94.0 Moderately correlated
86 ZNF878 4 43.0 Weakly correlated
87 ZNF8 4 99.0 Highly correlated
88 ZFP28 3 99.0 Highly correlated
89 ZNF17 3 69.0 Weakly correlated
90 ZNF347 3 43.0 Weakly correlated
91 ZNF433 3 43.0 Weakly correlated
92 ZNF611 3 19.6 Weakly correlated
93 ZNF674 3 99.0 Highly correlated
94 ZNF677 3 99.0 Highly correlated
95 ZNF716 3 19.6 Weakly correlated
96 ZNF765 3 8.6 Weakly correlated
97 ZNF780A 3 43.0 Weakly correlated
98 ZNF816 3 28.9 Weakly correlated
99 ZNF84 3 99.0 Highly correlated
100 ZNF85 3 28.9 Weakly correlated
101 ZFP30 2 99.0 Highly correlated
102 ZNF157 2 99.0 Highly correlated
103 ZNF248 2 99.0 Highly correlated
104 ZNF26 2 99.0 Highly correlated
105 ZNF284 2 43.0 Weakly correlated
106 ZNF30 2 94.0 Moderately correlated
107 ZNF41 2 99.0 Highly correlated
108 ZNF44 2 43.0 Weakly correlated
109 ZNF510 2 99.0 Highly correlated
110 ZNF530 2 28.9 Weakly correlated
111 ZNF555 2 94.0 Moderately correlated
112 ZNF559 2 74.0 Weakly correlated
113 ZNF586 2 43.0 Weakly correlated
114 ZNF671 2 94.0 Moderately correlated
115 ZNF675 2 8.6 Weakly correlated
116 ZNF93 2 8.6 Weakly correlated
117 PRDM9 1 0.0 Weakly correlated
118 RBAK 1 99.0 Highly correlated
119 ZFP69 1 99.0 Highly correlated
120 ZKSCAN3 1 99.0 Highly correlated
121 ZNF10 1 99.0 Highly correlated
122 ZNF114 1 28.9 Weakly correlated
123 ZNF124 1 43.0 Weakly correlated
124 ZNF136 1 74.0 Weakly correlated
125 ZNF25 1 99.0 Highly correlated
126 ZNF283 1 99.0 Highly correlated
127 ZNF287 1 99.0 Highly correlated
128 ZNF333 1 99.0 Highly correlated
129 ZNF343 1 74.0 Weakly correlated
130 ZNF383 1 99.0 Highly correlated
131 ZNF420 1 94.0 Moderately correlated
132 ZNF430 1 19.6 Weakly correlated
133 ZNF543 1 99.0 Highly correlated
134 ZNF560 1 43.0 Weakly correlated
135 ZNF607 1 43.0 Weakly correlated
136 ZNF615 1 99.0 Highly correlated
137 ZNF616 1 43.0 Weakly correlated
138 ZNF627 1 74.0 Weakly correlated
139 ZNF669 1 43.0 Weakly correlated
140 ZNF727 1 19.6 Weakly correlated
141 ZNF75A 1 94.0 Moderately correlated
142 ZNF776 1 43.0 Weakly correlated
143 ZNF77 1 87.0 Moderately correlated
144 ZNF786 1 99.0 Highly correlated
145 ZNF813 1 28.9 Weakly correlated
146 ZNF845 1 28.9 Weakly correlated
147 ZNF879 1 99.0 Highly correlated
148 ZNF91 1 6.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF263 99 180.0 Weakly correlated
2 ZNF534 65 19.6 Weakly correlated
3 ZIM3 54 87.0 Moderately correlated
4 ZNF680 28 28.9 Weakly correlated
5 ZNF479 22 6.4 Weakly correlated
6 ZNF723 21 15.2 Weakly correlated
7 ZNF701 15 28.9 Weakly correlated
8 ZNF317 15 99.0 Highly correlated
9 ZNF793 15 99.0 Highly correlated
10 ZNF766 15 43.0 Weakly correlated
11 ZNF257 15 0.0 Weakly correlated
12 ZNF75D 14 94.0 Moderately correlated
13 ZNF320 14 28.9 Weakly correlated
14 ZNF528 9 43.0 Weakly correlated
15 ZNF585A 8 99.0 Highly correlated
16 ZNF823 8 43.0 Weakly correlated
17 ZNF28 7 28.9 Weakly correlated
18 ZNF735 7 28.9 Weakly correlated
19 ZNF382 7 99.0 Highly correlated
20 ZNF679 7 28.9 Weakly correlated
21 ZNF589 6 28.9 Weakly correlated
22 ZFP37 6 99.0 Highly correlated
23 ZNF705D 6 28.9 Weakly correlated
24 ZNF573 6 94.0 Moderately correlated
25 ZNF468 5 28.9 Weakly correlated
26 ZNF282 5 319.0 Weakly correlated
27 ZNF2 5 99.0 Highly correlated
28 ZNF175 5 94.0 Moderately correlated
29 ZNF584 5 99.0 Highly correlated
30 ZNF37A 4 99.0 Highly correlated
31 ZNF705B 4 28.9 Weakly correlated
32 ZNF490 4 43.0 Weakly correlated
33 ZNF554 4 99.0 Highly correlated
34 ZNF251 3 94.0 Moderately correlated
35 ZNF347 3 43.0 Weakly correlated
36 ZNF549 3 87.0 Moderately correlated
37 ZNF485 3 94.0 Moderately correlated
38 ZNF483 3 99.0 Highly correlated
39 ZNF684 3 99.0 Highly correlated
40 ZNF707 3 74.0 Weakly correlated
41 ZFP69B 3 99.0 Highly correlated
42 ZNF597 3 94.0 Moderately correlated
43 ZKSCAN1 3 160.0 Weakly correlated
44 ZNF429 3 28.9 Weakly correlated
45 ZKSCAN5 3 160.0 Weakly correlated
46 ZNF101 3 43.0 Weakly correlated
47 ZNF816 2 28.9 Weakly correlated
48 ZNF716 2 19.6 Weakly correlated
49 ZNF585B 2 99.0 Highly correlated
50 ZNF197 2 99.0 Highly correlated
51 ZNF433 2 43.0 Weakly correlated
52 ZNF350 2 99.0 Highly correlated
53 ZNF331 2 94.0 Moderately correlated
54 ZNF140 2 99.0 Highly correlated
55 ZNF18 2 160.0 Weakly correlated
56 ZNF324 2 99.0 Highly correlated
57 ZNF506 2 28.9 Weakly correlated
58 ZNF780A 2 43.0 Weakly correlated
59 PRDM9 1 0.0 Weakly correlated
60 ZNF682 1 28.9 Weakly correlated
61 ZNF778 1 74.0 Weakly correlated
62 ZFP57 1 87.0 Moderately correlated
63 ZKSCAN8 1 160.0 Weakly correlated
64 ZNF141 1 43.0 Weakly correlated
65 ZNF486 1 8.6 Weakly correlated
66 ZNF671 1 94.0 Moderately correlated
67 ZNF677 1 99.0 Highly correlated
68 ZNF790 1 99.0 Highly correlated
69 ZNF264 1 99.0 Highly correlated
70 ZNF44 1 43.0 Weakly correlated
71 ZNF273 1 28.9 Weakly correlated
72 ZNF675 1 8.6 Weakly correlated
73 ZNF283 1 99.0 Highly correlated
74 ZFP69 1 99.0 Highly correlated
75 ZNF530 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF257 0.0 Weakly correlated
2 ZNF263 180.0 Weakly correlated
3 ZNF28 28.9 Weakly correlated
4 ZNF534 19.6 Weakly correlated
5 ZNF573 94.0 Moderately correlated
6 ZNF701 28.9 Weakly correlated
7 ZNF705D 28.9 Weakly correlated
8 ZNF75D 94.0 Moderately correlated
9 ZNF823 43.0 Weakly correlated