ZRdb KZFP & Repeats
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LTR_LTR32

  • Name
    LTR32
  • Repbase
    LTR32
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000488
Description :

Instances of this family may be subdivided at least in two subfamilies.LTR32 sequences belong presumably to the endogenous retrovirus HERV32,related to the human retroviruses HERV18 and HERVL, and mouse retrovirusMERVL. Pol protein shows significant similarity to the Pol proteinsencoded by MERVL, human and simian foamy viruses, fish retrovirus(walleye) and Gypsy-related transposon MAG from silkworm. Also, primate-specific rather than eutherian- or even euarchontoglire-wide.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtatggtagacgcacctgacagcaataacttaagcataccctgagaatgaccctgtatggcagacgcacctgaatgtgtgttcggagttccgagctagggaatccgggagtggccaacccggagattcattccttatctatgaggaacatctgagcccccggcccgtcccgtggaacgcgggccgtacaggggatcgaggccctttgttttgggttaaatgaaggttgccaggtggaggttgttagggggagggtgctaagtgaaaatgctatataaactgcatgctttttgcaagcggttgcggttctcctgtccagcccgccgccactggactgtctcccctgtatgtaagcccccaataaaccccatgtctcgtttgctggctctgggtctcttcttcggcctcttgaacctggtgccatccctactgaagttaataggggtccggcacgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 281 94.0 Weakly correlated
2 ZNF680 100 28.9 Moderately correlated
3 ZNF793 37 99.0 Weakly correlated
4 ZNF766 30 43.0 Highly correlated
5 ZNF382 25 99.0 Weakly correlated
6 ZNF534 17 19.6 Weakly correlated
7 ZNF317 9 99.0 Weakly correlated
8 ZNF589 9 28.9 Moderately correlated
9 ZNF263 7 180.0 Weakly correlated
10 ZNF175 7 94.0 Weakly correlated
11 ZNF679 6 28.9 Moderately correlated
12 ZNF479 6 6.4 Weakly correlated
13 ZNF705B 5 28.9 Moderately correlated
14 ZKSCAN1 5 160.0 Weakly correlated
15 ZNF331 5 94.0 Weakly correlated
16 ZNF597 4 94.0 Weakly correlated
17 ZNF701 4 28.9 Moderately correlated
18 ZNF75D 4 94.0 Weakly correlated
19 ZNF584 4 99.0 Weakly correlated
20 ZFP37 4 99.0 Weakly correlated
21 ZIM3 4 87.0 Weakly correlated
22 ZNF394 4 99.0 Weakly correlated
23 ZFP57 4 87.0 Weakly correlated
24 ZNF92 3 28.9 Moderately correlated
25 ZNF2 3 99.0 Weakly correlated
26 ZNF197 3 99.0 Weakly correlated
27 ZNF133 3 99.0 Weakly correlated
28 ZKSCAN8 2 160.0 Weakly correlated
29 ZNF723 2 15.2 Weakly correlated
30 ZNF735 2 28.9 Moderately correlated
31 ZNF324 2 99.0 Weakly correlated
32 ZNF257 2 0.0 Weakly correlated
33 ZNF563 2 28.9 Moderately correlated
34 ZNF554 2 99.0 Weakly correlated
35 ZNF519 2 19.6 Weakly correlated
36 ZNF506 2 28.9 Moderately correlated
37 ZNF490 2 43.0 Highly correlated
38 ZNF486 2 8.6 Weakly correlated
39 ZNF778 1 74.0 Weakly correlated
40 ZNF101 1 43.0 Highly correlated
41 ZNF136 1 74.0 Weakly correlated
42 ZNF736 1 43.0 Highly correlated
43 ZNF85 1 28.9 Moderately correlated
44 ZNF674 1 99.0 Weakly correlated
45 ZNF141 1 43.0 Highly correlated
46 ZNF17 1 69.0 Weakly correlated
47 ZNF695 1 28.9 Moderately correlated
48 ZNF182 1 99.0 Weakly correlated
49 ZNF18 1 160.0 Weakly correlated
50 ZNF274 1 99.0 Weakly correlated
51 ZNF558 1 99.0 Weakly correlated
52 ZNF28 1 28.9 Moderately correlated
53 ZNF485 1 94.0 Weakly correlated
54 ZNF417 1 28.9 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 104 94.0 Weakly correlated
2 ZNF680 36 28.9 Moderately correlated
3 ZNF793 24 99.0 Weakly correlated
4 ZNF534 12 19.6 Weakly correlated
5 ZNF175 4 94.0 Weakly correlated
6 ZNF589 4 28.9 Moderately correlated
7 ZNF766 4 43.0 Highly correlated
8 ZNF584 3 99.0 Weakly correlated
9 ZNF197 2 99.0 Weakly correlated
10 ZNF695 1 28.9 Moderately correlated
11 ZNF506 1 28.9 Moderately correlated
12 ZNF417 1 28.9 Moderately correlated
13 ZNF75D 1 94.0 Weakly correlated
14 ZNF735 1 28.9 Moderately correlated
15 ZNF674 1 99.0 Weakly correlated
16 ZNF490 1 43.0 Highly correlated
17 ZNF485 1 94.0 Weakly correlated
18 ZNF257 1 0.0 Weakly correlated
19 ZNF679 1 28.9 Moderately correlated
20 ZNF92 1 28.9 Moderately correlated
21 ZNF701 1 28.9 Moderately correlated
22 ZNF563 1 28.9 Moderately correlated
23 ZNF479 1 6.4 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF251 94.0 Weakly correlated
2 ZNF534 19.6 Weakly correlated
3 ZNF680 28.9 Moderately correlated