ZRdb KZFP & Repeats
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LTR_LTR31

  • Name
    LTR31
  • Repbase
    LTR31
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000487
Description :

LTR31 is a putative LTR from the MER4-int/MER65-int group.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgcttgcttttggtcgcttgctttttgttatcgtttttntttttttcctttttccatgaagctgaaggccgcggtagctgaaggccncgccgctgaacgctgaaacttaaccttcactggctnccttatagataacattcataggtcaccatggtaacggtcgcttacagttgtttttcanggaacttgggncagctcctgtccagttcaaaccggttgagaccaccgacccttcaactgggcctgcgcgagtgcccgagaggtggccttttgacgtcagagggccaaaaactccaccctcagatcatgctaacgccgccattttctgnacatgcgtcctatgaagngccatgaaccccgactacgcttgcgcagaacgaaccnattacctcatttttccccaccgccaatcacctttccccacgccttagaccaccccgcttctctancccataaatatccctaagccctatcttcggggaggcggatttgagagctgttctcccgcctcctcgcttggcggccttgtgaataaatcttttctcttttgcaaaacccgtcgtcacagtgattggcttactgcgcgcgggcagaacggacctggacctggccggtaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 28 43.0 Weakly correlated
2 ZNF823 12 43.0 Weakly correlated
3 ZNF175 10 94.0 Weakly correlated
4 ZNF382 10 99.0 Weakly correlated
5 ZNF197 9 99.0 Weakly correlated
6 ZNF589 7 28.9 Weakly correlated
7 ZNF549 6 87.0 Weakly correlated
8 ZKSCAN8 6 160.0 Weakly correlated
9 ZNF793 6 99.0 Weakly correlated
10 ZNF584 5 99.0 Weakly correlated
11 ZFP57 4 87.0 Weakly correlated
12 ZNF799 3 43.0 Weakly correlated
13 ZNF274 2 99.0 Weakly correlated
14 ZNF263 2 180.0 Weakly correlated
15 ZNF547 2 74.0 Highly correlated
16 ZNF441 2 43.0 Weakly correlated
17 ZNF607 1 43.0 Weakly correlated
18 ZNF641 1 99.0 Weakly correlated
19 ZNF723 1 15.2 Weakly correlated
20 ZNF677 1 99.0 Weakly correlated
21 ZNF679 1 28.9 Weakly correlated
22 ZNF701 1 28.9 Weakly correlated
23 ZNF705B 1 28.9 Weakly correlated
24 ZNF528 1 43.0 Weakly correlated
25 ZNF808 1 19.6 Weakly correlated
26 ZNF92 1 28.9 Weakly correlated
27 ZNF597 1 94.0 Weakly correlated
28 ZNF534 1 19.6 Weakly correlated
29 ZNF506 1 28.9 Weakly correlated
30 ZNF480 1 43.0 Weakly correlated
31 ZNF436 1 180.0 Weakly correlated
32 ZNF429 1 28.9 Weakly correlated
33 ZNF417 1 28.9 Weakly correlated
34 ZNF18 1 160.0 Weakly correlated
35 ZNF182 1 99.0 Weakly correlated
36 ZNF136 1 74.0 Highly correlated
37 ZKSCAN1 1 160.0 Weakly correlated
38 ZIM3 1 87.0 Weakly correlated
39 ZFP69B 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF823 12 43.0 Weakly correlated
2 ZNF549 6 87.0 Weakly correlated
3 ZNF799 3 43.0 Weakly correlated
4 ZNF766 3 43.0 Weakly correlated
5 ZNF175 2 94.0 Weakly correlated
6 ZNF793 2 99.0 Weakly correlated
7 ZNF584 2 99.0 Weakly correlated
8 ZNF197 2 99.0 Weakly correlated
9 ZNF480 1 43.0 Weakly correlated
10 ZNF641 1 99.0 Weakly correlated
11 ZNF534 1 19.6 Weakly correlated
12 ZNF589 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF823 43.0 Weakly correlated