ZRdb KZFP & Repeats
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LTR_LTR2C

  • Name
    LTR2C
  • Repbase
    LTR2C
  • Type
    LTR
  • Emergence
    19.6 Mya
  • Dfam Id
    DF0000485
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tanggaangagaccaccacttctcctgctgccctccccagcttctccccaacctccccttttccctagtttataagacaggagaaaagggagaaagcaaaaagttggaaagaaacagaagtaagataaatagccagacgaccttggcgccaccacccggccctggtggttaaaaaaataataataataatatcaacccctgaccnaaactactngtgttatctgtaaattccagacattgtatgagaaagcactgtaaaactttttgttctgttagctgatgcatgtagcccccagtcacgttccccacgcttgctcgatctatcacgaccctttcacgtggaccccttagagttgtaagcccttaaaagggccaggaatttctttttcggggagctcggctcttaagacgcgagtctgccgacgctcccggccgaataaaaacctcttccttctttaatccggtgtctgaggagttttgtctgcggctcgtcctgctaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 39 43.0 Weakly correlated
2 ZNF813 26 28.9 Weakly correlated
3 ZNF317 26 99.0 Weakly correlated
4 ZNF589 22 28.9 Weakly correlated
5 ZNF382 18 99.0 Weakly correlated
6 ZNF197 15 99.0 Weakly correlated
7 ZNF28 15 28.9 Weakly correlated
8 ZKSCAN8 13 160.0 Weakly correlated
9 ZNF257 12 0.0 Weakly correlated
10 ZNF584 10 99.0 Weakly correlated
11 ZNF175 8 94.0 Weakly correlated
12 ZKSCAN1 7 160.0 Weakly correlated
13 ZNF528 7 43.0 Weakly correlated
14 ZNF394 6 99.0 Weakly correlated
15 ZNF479 5 6.4 Moderately correlated
16 ZNF263 4 180.0 Weakly correlated
17 ZFP69B 4 99.0 Weakly correlated
18 ZNF18 3 160.0 Weakly correlated
19 ZNF485 3 94.0 Weakly correlated
20 ZNF124 3 43.0 Weakly correlated
21 ZNF554 2 99.0 Weakly correlated
22 ZNF445 2 99.0 Weakly correlated
23 ZNF506 2 28.9 Weakly correlated
24 ZFP57 2 87.0 Weakly correlated
25 ZNF793 2 99.0 Weakly correlated
26 ZNF680 2 28.9 Weakly correlated
27 ZFP37 2 99.0 Weakly correlated
28 ZNF431 2 28.9 Weakly correlated
29 ZNF324 2 99.0 Weakly correlated
30 ZNF135 2 94.0 Weakly correlated
31 ZNF182 1 99.0 Weakly correlated
32 ZNF891 1 99.0 Weakly correlated
33 ZNF101 1 43.0 Weakly correlated
34 ZNF77 1 87.0 Weakly correlated
35 ZNF705B 1 28.9 Weakly correlated
36 ZNF695 1 28.9 Weakly correlated
37 ZNF140 1 99.0 Weakly correlated
38 ZNF610 1 28.9 Weakly correlated
39 ZNF443 1 19.6 Highly correlated
40 ZNF189 1 99.0 Weakly correlated
41 ZNF558 1 99.0 Weakly correlated
42 ZNF274 1 99.0 Weakly correlated
43 ZNF34 1 99.0 Weakly correlated
44 ZNF436 1 180.0 Weakly correlated
45 ZNF440 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF257 12 0.0 Weakly correlated
2 ZNF766 5 43.0 Weakly correlated
3 ZNF485 3 94.0 Weakly correlated
4 ZNF124 2 43.0 Weakly correlated
5 ZNF197 2 99.0 Weakly correlated
6 ZNF813 1 28.9 Weakly correlated
7 ZNF584 1 99.0 Weakly correlated
8 ZNF440 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF257 0.0 Weakly correlated