ZRdb KZFP & Repeats
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LTR_LTR2B

  • Name
    LTR2B
  • Repbase
    LTR2B
  • Type
    LTR
  • Emergence
    19.6 Mya
  • Dfam Id
    DF0000484
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgagggaagagagagaccctctcatattgttttatattgttttatactcagtacctgttttaagaaaaaaacaacaaggaagtaaaaccaaagacaggcagcccggcgccaggcccgaaaccaggcctgggcctgcctggcctaaacccagtagttaaaaatcaactcatgacttagaaaccgatgttattcatagattccagacattgtatagaagaacattgtgaaactccctgccctgttctgtttctctctgaccaccggtgcatgcagcccctgtcacgtaccccctgcttgctcaaatcaatcacgaccctttcatgtgaaatctttagtgttgtgagcccttaaaagggacagaaattgtgcactcggggagctcggattttaaggcagtagcttgccgatgctcccagctgaataaagcccttccttctacaactcggtgtctgagaggttttgtctgcggctcgtcctgctaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF597 18 94.0 Weakly correlated
2 ZNF766 13 43.0 Weakly correlated
3 ZNF317 11 99.0 Weakly correlated
4 ZNF813 8 28.9 Weakly correlated
5 ZNF18 8 160.0 Weakly correlated
6 ZNF382 8 99.0 Weakly correlated
7 ZNF175 7 94.0 Weakly correlated
8 ZNF274 6 99.0 Weakly correlated
9 ZNF589 6 28.9 Weakly correlated
10 ZKSCAN8 5 160.0 Weakly correlated
11 ZNF584 5 99.0 Weakly correlated
12 ZNF506 4 28.9 Weakly correlated
13 ZNF479 3 6.4 Moderately correlated
14 ZNF534 3 19.6 Highly correlated
15 ZNF394 2 99.0 Weakly correlated
16 ZNF441 2 43.0 Weakly correlated
17 ZNF257 2 0.0 Weakly correlated
18 ZNF263 2 180.0 Weakly correlated
19 ZNF197 2 99.0 Weakly correlated
20 ZNF528 2 43.0 Weakly correlated
21 ZNF169 2 94.0 Weakly correlated
22 ZNF573 1 94.0 Weakly correlated
23 ZNF565 1 99.0 Weakly correlated
24 ZNF878 1 43.0 Weakly correlated
25 ZNF679 1 28.9 Weakly correlated
26 ZNF723 1 15.2 Moderately correlated
27 ZNF75D 1 94.0 Weakly correlated
28 ZNF765 1 8.6 Moderately correlated
29 ZFP69B 1 99.0 Weakly correlated
30 ZNF560 1 43.0 Weakly correlated
31 ZNF558 1 99.0 Weakly correlated
32 ZNF486 1 8.6 Moderately correlated
33 ZNF33A 1 99.0 Weakly correlated
34 ZNF324 1 99.0 Weakly correlated
35 ZNF2 1 99.0 Weakly correlated
36 ZNF28 1 28.9 Weakly correlated
37 ZNF254 1 43.0 Weakly correlated
38 ZNF189 1 99.0 Weakly correlated
39 ZNF140 1 99.0 Weakly correlated
40 ZNF136 1 74.0 Weakly correlated
41 ZNF101 1 43.0 Weakly correlated
42 ZKSCAN1 1 160.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 5 43.0 Weakly correlated
2 ZFP69B 1 99.0 Weakly correlated
3 ZNF101 1 43.0 Weakly correlated
4 ZNF723 1 15.2 Moderately correlated
5 ZNF534 1 19.6 Highly correlated
6 ZNF317 1 99.0 Weakly correlated
7 ZNF506 1 28.9 Weakly correlated
8 ZNF584 1 99.0 Weakly correlated
9 ZNF75D 1 94.0 Weakly correlated
10 ZNF33A 1 99.0 Weakly correlated
11 ZNF597 1 94.0 Weakly correlated
12 ZNF813 1 28.9 Weakly correlated
13 ZNF560 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats