ZRdb KZFP & Repeats
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LTR_LTR29

  • Name
    LTR29
  • Repbase
    LTR29
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000483
Description :

Putative LTR of retroelement related to the MER4/41/57/65-int group.LTR29 elements share common fragments with MER39B, MER39, and MER34.LTR29 has 4 bp TSD. Original orientation has been changed to agree withthe internal sequence
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttggggctcagaaaccgataccccaaaatatggcgctttgacatgctgaactgaagaagcctcaaggtctctctgacctccccccataccccccaccgtctctcccaaagcacggganaagttgnnnnctgaagttcctttatctgcctaagatccagacccaccaaggagaacaattgttttttcttcccctccctgttatctcattatctattgcagaaaagaagaccaagaatgtaaccacacctgaacagaccctttcacaagataatgactgtctccaaggatcatttaaattccaaagagaactatttacaagttaatctctgttccccgnatccattcattctccctagtaatcatttattgcccctcaacagaattcctcttctcccccctcccataacctgttttgccaggatccaagcccccattctttctgtaacctcaagatggtatataagcttctgnacctcattgggaggttgggtcttcattctgaaggctcccgtgtatacacgttaaataaatttgtatgccttttctcctattaatcaatctgcctcntgtcagtgatttttcagcgaaccttcagggggccaagggccttggcccccaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 16 28.9 Moderately correlated
2 ZNF766 16 43.0 Highly correlated
3 ZNF382 14 99.0 Weakly correlated
4 ZNF589 11 28.9 Moderately correlated
5 ZNF584 7 99.0 Weakly correlated
6 ZNF679 7 28.9 Moderately correlated
7 ZNF197 7 99.0 Weakly correlated
8 ZNF175 7 94.0 Weakly correlated
9 ZIM3 7 87.0 Weakly correlated
10 ZNF394 6 99.0 Weakly correlated
11 ZNF534 5 19.6 Weakly correlated
12 ZNF18 4 160.0 Weakly correlated
13 ZKSCAN8 4 160.0 Weakly correlated
14 ZNF263 4 180.0 Weakly correlated
15 ZNF211 3 94.0 Weakly correlated
16 ZFP37 3 99.0 Weakly correlated
17 ZNF479 3 6.4 Weakly correlated
18 ZNF101 3 43.0 Highly correlated
19 ZKSCAN1 3 160.0 Weakly correlated
20 ZNF558 2 99.0 Weakly correlated
21 ZNF701 2 28.9 Moderately correlated
22 ZNF317 2 99.0 Weakly correlated
23 ZNF671 2 94.0 Weakly correlated
24 ZNF597 2 94.0 Weakly correlated
25 ZNF723 2 15.2 Weakly correlated
26 ZNF429 2 28.9 Moderately correlated
27 ZNF140 2 99.0 Weakly correlated
28 ZNF705D 1 28.9 Moderately correlated
29 ZNF705B 1 28.9 Moderately correlated
30 ZNF486 1 8.6 Weakly correlated
31 ZNF727 1 19.6 Weakly correlated
32 ZNF681 1 28.9 Moderately correlated
33 ZNF735 1 28.9 Moderately correlated
34 ZNF765 1 8.6 Weakly correlated
35 ZNF793 1 99.0 Weakly correlated
36 ZNF799 1 43.0 Highly correlated
37 ZNF808 1 19.6 Weakly correlated
38 ZNF823 1 43.0 Highly correlated
39 ZNF440 1 28.9 Moderately correlated
40 ZFP69B 1 99.0 Weakly correlated
41 ZNF124 1 43.0 Highly correlated
42 ZNF169 1 94.0 Weakly correlated
43 ZNF251 1 94.0 Weakly correlated
44 ZNF257 1 0.0 Weakly correlated
45 ZNF273 1 28.9 Moderately correlated
46 ZNF284 1 43.0 Highly correlated
47 ZNF2 1 99.0 Weakly correlated
48 ZNF607 1 43.0 Highly correlated
49 ZNF44 1 43.0 Highly correlated
50 ZNF468 1 28.9 Moderately correlated
51 ZNF547 1 74.0 Weakly correlated
52 ZNF549 1 87.0 Weakly correlated
53 ZNF563 1 28.9 Moderately correlated
54 ZNF568 1 99.0 Weakly correlated
55 ZNF585A 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF197 5 99.0 Weakly correlated
2 ZNF584 4 99.0 Weakly correlated
3 ZIM3 2 87.0 Weakly correlated
4 ZNF211 2 94.0 Weakly correlated
5 ZNF263 2 180.0 Weakly correlated
6 ZNF534 2 19.6 Weakly correlated
7 ZNF766 2 43.0 Highly correlated
8 ZNF479 2 6.4 Weakly correlated
9 ZNF680 2 28.9 Moderately correlated
10 ZNF823 1 43.0 Highly correlated
11 ZNF735 1 28.9 Moderately correlated
12 ZNF671 1 94.0 Weakly correlated
13 ZNF317 1 99.0 Weakly correlated
14 ZNF468 1 28.9 Moderately correlated
15 ZNF273 1 28.9 Moderately correlated
16 ZNF793 1 99.0 Weakly correlated
17 ZNF589 1 28.9 Moderately correlated
18 ZNF175 1 94.0 Weakly correlated
19 ZNF101 1 43.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats